Top scanpy issues

Avoid argument explosion in plotting functions

enhancement
fidelram picture fidelram·17 Dec 2019·6 Comments
👍2

Regress Out using all genes

question
Khalid-Usman picture Khalid-Usman·25 Jun 2019·3 Comments

sc.pl.stacked_violin weird scale

shengyongniu picture shengyongniu·1 Jun 2019·2 Comments

Geneset based clustering and CytOF Compatibility

biskra picture biskra·2 Mar 2019·11 Comments

Plot of ranked genes groups with non-raw data or layers

SamueleSoraggi picture SamueleSoraggi·22 Jan 2019·13 Comments

counts_per_cell has no effect on pp.normalize_per_cell(adata)

VolkerBergen picture VolkerBergen·15 Jan 2019·23 Comments

sc.pl.stacked_violin: IndexError, list index out of range

JuHey picture JuHey·27 Dec 2018·12 Comments

annotating anndata object with clusters and tnse info from .csv file

manarai picture manarai·17 Dec 2018·2 Comments

Not able to color groups on pca plot

sonyasofia7 picture sonyasofia7·30 Nov 2018·2 Comments
👍1

Interest in HTO/ADT demultiplexing and analysis?

external
wflynny picture wflynny·8 Nov 2018·19 Comments
👍7 👀2
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