Top scanpy issues

Neighbors with `metric='jaccard'` breaks clustering

sidneymbell picture sidneymbell·15 Jun 2018·7 Comments

Pre-commit (dev workflow)

enhancement
ivirshup picture ivirshup·4 Jan 2021·7 Comments

ImportError: cannot import name 'read' from 'scanpy' (unknown location)

bug
roofya picture roofya·28 Sep 2020·2 Comments

phenograph Expected list, got numpy.ndarray

asmariyaz23 picture asmariyaz23·5 Sep 2020·10 Comments

log1p warns adata.X is logged when it may not be (when other layers are logged)

bug
gheimberg picture gheimberg·28 Jul 2020·3 Comments

module 'louvain._c_louvain' has no attribute '_set_rng_seed'

bug upstream
YubinXie picture YubinXie·1 May 2020·8 Comments

Better CI for docs

bug
ivirshup picture ivirshup·3 Apr 2020·2 Comments

Is it possible to test for bimodality in scanpy?

enhancement
erikadudki picture erikadudki·5 Mar 2020·3 Comments

Returning cluster assignments as str conflicts with matplotlib color sequences

question
dburkhardt picture dburkhardt·5 Feb 2020·19 Comments

regress_out failed in the pbmc3k tutorial

bug
naity picture naity·26 Jan 2020·5 Comments
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