Scout: CANCER scout: Remoxe exac --> change to gnomad

Created on 5 Feb 2021  路  4Comments  路  Source: Clinical-Genomics/scout

Hi!
As promised, an issue related to what we discussed regarding exac and gnomag, I think @hassanfa and I have talked about this before.
The issue lies here, we would like to see the gnomad frequencies instead of the exac freq. For instance, in the pic below you can see that we have made a global comment on that the variant is present in approx 70-80% of the population (based on gnomad).
image

Do you know what the status of this issue is @hassanfa ?

Regards ,HEro

enhancement Cancer

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Wow... is there a tracking of all the spelling errors I am making and trying to spell it correctly whilst creating an issue!!! Sorry about that!

You should see my issues :-) Github tracks everything! 馃槀

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I think We should rename Exac to something more general, not just gnomAD. How about Pop. Freq? Although, COSMIC will not fit in Pop. Freq definition.

works for me! @hassanfa As long as the variants found that are common can be filtered out, instead of a global comment :)

Wow... is there a tracking of all the spelling errors I am making and trying to spell it correctly whilst creating an issue!!! Sorry about that!

Wow... is there a tracking of all the spelling errors I am making and trying to spell it correctly whilst creating an issue!!! Sorry about that!

You should see my issues :-) Github tracks everything! 馃槀

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