Scout: Deprecate load_scout?

Created on 23 Nov 2020  路  4Comments  路  Source: Clinical-Genomics/scout

There is a mysterious function called load scout in https://github.com/Clinical-Genomics/scout/blob/a5d0ee537ea1b7487740a0195078c7e9641c0df7/scout/load/all.py#L137

This has for a long time been used by the application CG to load cases into Scout. However that is now changed to using the more clean CLI api scout load case.

Perhaps it is time to deprecate that function if it is not used by other parts of the code or other collaborators. Maybe send out the question to representatives in Lund (@bjhall @ViktorHy @mhkc ) and Ume氓 (@ninanorgren ):

How do you load cases into Scout?

Refactor
Source
picture moonso

Most helpful comment

We're also using the CLI

picture ninanorgren on 23 Nov 2020
👍3

All 4 comments

We're using the CLI, so deprecate away!

bjhall picture bjhall on 23 Nov 2020
😄3

We're also using the CLI

ninanorgren picture ninanorgren on 23 Nov 2020
👍3

What about you @leahkemp?

northwestwitch picture northwestwitch on 23 Nov 2020

Thanks for checking with me @northwestwitch I've been using scout load case exclusively, so no problem by me!

leahkemp picture leahkemp on 24 Nov 2020
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