*Download links are missing in the HTML output.
I can see the download links here https://readthedocs.org/projects/aradi-rtdtest/downloads/ and

Sorry, my formulation was misleading. If you look at the generated HTML document https://aradi-rtdtest.readthedocs.io/en/latest/rtdtest.html, the links for the two files are missing, which were added via the :download: role to the RST-source. The original RST-source is:
Test chapter
============
Download button for some input file:
.. only :: builder_html
See :download:`full input 1 <_downloads/md1/dftb_in.hsd>` and
:download:`full input 2 <_downloads/md2/dftb_in.hsd>`
Finished.
The links are relative to the current file or if you want to put absolute links, it need to begin with /
http://www.sphinx-doc.org/en/master/usage/restructuredtext/roles.html#role-download
As the _downloads folder is in the same folder as the RST-source file (in docs/) it should work in my opinion. If I build the HTML locally using sphinx 1.8, the download links in the generated HTML appear as expected. Further the build log on Readthedocs seems also to indicate, that the :download: role was used correctly, as the referenced files are copied:
copying downloadable files... [ 50%] _downloads/md1/dftb_in.hsd
copying downloadable files... [100%] _downloads/md2/dftb_in.hsd
I guess the _downloads folder is colliding somehow with the folder from sphinx?
I don't think so:
_downloads into _mydownloads. On my local system, it still works. On readthedocs it's still broken. Although Sphinx apparently recognizes the :download: role and the associated filescopying downloadable files... [ 50%] _mydownloads/md1/dftb_in.hsd
copying downloadable files... [100%] _mydownloads/md2/dftb_in.hsd
the appropriate links in the HTML page still do not show up.
I was looking a little more into this issue, I realized that you are using .. only :: builder_html, rtd uses a custom builder called readthedocs. So, you should use .. only :: builder_html or readthedocs. I tested this locally and it works

Works perfectly, thank you very much for your time! :smile:
Most helpful comment
I was looking a little more into this issue, I realized that you are using
.. only :: builder_html, rtd uses a custom builder calledreadthedocs. So, you should use.. only :: builder_html or readthedocs. I tested this locally and it works