Slic3r PE 1.39.1 (not really relevant)
MacOS (not really relevant)
_Is this a new feature request?_
Yes.
Any 3 or more objects where 2 or more of them are above the extruder clearance height
Also (not sure if this should be it's own issue), but is the default extruder clearance in Slic3r PE settings the correct clearance for the Prusa Printers? If not, it should probably be adjusted to default to the correct value.
It seems a better feature would be more dynamic: print as much of an object as clearance would allow before moving to the next one. This way all the small ones would be printed perfectly, while the large one would print some millimeters at a time.
@scalablecory that would be interesting! My intuition says that might risk creating seams when it transitioned to another object for a while, before going back to the now much cooler object. I don't have a ton of experience with 3D printing yet though, so that intuition may very well be wrong, in which case that sounds like a good technique.
Most helpful comment
It seems a better feature would be more dynamic: print as much of an object as clearance would allow before moving to the next one. This way all the small ones would be printed perfectly, while the large one would print some millimeters at a time.