Picongpu: Compilation issue - 'ArgsErrorCode' in 'class picongpu::ArgsParser' does not name a type

Created on 17 Aug 2020 · 21Comments · Source: ComputationalRadiationPhysics/picongpu

While builind PIConGPU 0.4.3 on centos 7 with gcc 7.3.0, there is the following error:

picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/ArgsParser.cpp:64:17:'ArgsErrorCode' in 
'class picongpu::ArgsParser' does not name a type 
 ArgsParser::ArgsErrorCode ArgsParser::parse( int argc, char** argv )

Log from invoking pic-build

pic-build
build directory: .build
cmake command: cmake  -DCMAKE_INSTALL_PREFIX=.. -DPIC_EXTENSION_PATH=..   -DALPAKA_ACC_GPU_CUDA_ENABLE=ON -DALPAKA_ACC_GPU_CUDA_ONLY_MODE=ON /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu
-- Found Boost 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/Boost-1.70.0
--   Requested configuration: QUIET
-- Found boost_headers 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/boost_headers-1.70.0
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found suitable version "10.0", minimum required is "7.0") 
-- ALPAKA_ACC_GPU_CUDA_ONLY_MODE
-- ALPAKA_ACC_GPU_CUDA_ENABLED
-- _cupla_COMPILE_OPTIONS_PUBLIC: -std=c++11;-ftemplate-depth-512;-Wall;-Wextra;-Wno-unknown-pragmas;-Wno-unused-parameter;-Wno-unused-local-typedefs;-Wno-attributes;-Wno-reorder;-Wno-sign-compare
-- _cupla_COMPILE_DEFINITIONS_PUBLIC: ALPAKA_ACC_GPU_CUDA_ONLY_MODE;ALPAKA_ACC_GPU_CUDA_ENABLED;ALPAKA_DEBUG=0;CUPLA_STREAM_ASYNC_ENABLED=1
-- _cupla_INCLUDE_DIRECTORIES_PUBLIC: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/include;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/cupla/include
-- _cupla_LINK_LIBRARIES_PUBLIC: Boost::boost;general;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/lib64/libcudart.so;general;pthread;general;rt
-- Found Boost 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/Boost-1.70.0
--   Requested configuration: QUIET REQUIRED COMPONENTS filesystem;system;math_tr1
-- Found boost_filesystem 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/boost_filesystem-1.70.0
--   libboost_filesystem.a
-- Adding boost_filesystem dependencies: headers
-- Found boost_system 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/boost_system-1.70.0
--   libboost_system.a
-- Adding boost_system dependencies: headers
-- Found boost_math_tr1 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/boost_math_tr1-1.70.0
--   libboost_math_tr1.a
-- Adding boost_math_tr1 dependencies: headers
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/Boost-1.70.0/BoostConfig.cmake (found suitable version "1.70.0", minimum required is "1.62.0") found components: filesystem system math_tr1 
-- Boost: result_of with TR1 style and decltype fallback
-- Found OpenMP_C: -fopenmp  
-- Found OpenMP_CXX: -fopenmp  
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found suitable version "10.0", minimum required is "5.0") 
-- Found Boost 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/Boost-1.70.0
--   Requested configuration: QUIET REQUIRED
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/Boost-1.70.0/BoostConfig.cmake (found suitable version "1.70.0", minimum required is "1.48.0")  
-- Found OpenMP_C: -fopenmp  
-- Found OpenMP_CXX: -fopenmp  
-- Found Boost 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/Boost-1.70.0
--   Requested configuration: QUIET REQUIRED
-- Found Boost 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/Boost-1.70.0
--   Requested configuration: QUIET REQUIRED COMPONENTS program_options;regex;filesystem;system;math_tr1;serialization
-- Found boost_program_options 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/boost_program_options-1.70.0
--   libboost_program_options.a
-- Adding boost_program_options dependencies: headers
-- Found boost_regex 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/boost_regex-1.70.0
--   libboost_regex.a
-- Adding boost_regex dependencies: headers
-- Found boost_serialization 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/boost_serialization-1.70.0
--   libboost_serialization.a
-- Adding boost_serialization dependencies: headers
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/Boost-1.70.0/BoostConfig.cmake (found suitable version "1.70.0", minimum required is "1.62.0") found components: program_options regex filesystem system math_tr1 serialization 
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found version "10.0") 
-- Found Boost 1.70.0 at /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/Boost-1.70.0
--   Requested configuration: QUIET REQUIRED COMPONENTS program_options
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/lib/cmake/Boost-1.70.0/BoostConfig.cmake (found suitable version "1.70.0", minimum required is "1.62.0") found components: program_options 
-- Can NOT find 'adios_config' - set ADIOS_ROOT or check your PATH
-- Could NOT find ADIOS (missing: ADIOS_LIBRARIES ADIOS_INCLUDE_DIRS) (Required is at least version "1.13.1")
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found Splash: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/lib/cmake/Splash
-- Found PNGwriter: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/pngwriter-0.7.0-5rceoxaqtjfrytd3yzdnnothehbmbxdp/lib/cmake/PNGwriter
-- Could NOT find ISAAC - set ISAAC_DIR or check your CMAKE_PREFIX_PATH
CMake Warning (dev) at CMakeLists.txt:376 (set):
  implicitly converting 'LIST' to 'STRING' type.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done
-- Build files have been written to: /nfs/dust/atlas/user/maniageo/picongpu/.build
[  4%] Built target cupla
[ 20%] Built target cuda_memtest
[ 29%] Built target mpiInfo
[ 33%] Building CXX object CMakeFiles/picongpu-hostonly.dir/ArgsParser.cpp.o
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/ArgsParser.cpp:64:17: error: 'ArgsErrorCode' in 'class picongpu::ArgsParser' does not name a type
     ArgsParser::ArgsErrorCode ArgsParser::parse( int argc, char** argv )
                 ^~~~~~~~~~~~~
make[2]: *** [CMakeFiles/picongpu-hostonly.dir/ArgsParser.cpp.o] Error 1
make[1]: *** [CMakeFiles/picongpu-hostonly.dir/all] Error 2
make: *** [all] Error 2

ERROR: Could not successfully run make install in build directory:
       .build

Log from invoking make VERBOSE=ON:

make VERBOSE=ON
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -S/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu -B/nfs/dust/atlas/user/maniageo/picongpu/.build --check-build-system CMakeFiles/Makefile.cmake 0
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E cmake_progress_start /nfs/dust/atlas/user/maniageo/picongpu/.build/CMakeFiles /nfs/dust/atlas/user/maniageo/picongpu/.build/CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/nfs/dust/atlas/user/maniageo/picongpu/.build'
make  -f CMakeFiles/picongpu-hostonly.dir/build.make CMakeFiles/picongpu-hostonly.dir/depend
make[2]: Entering directory `/nfs/dust/atlas/user/maniageo/picongpu/.build'
cd /nfs/dust/atlas/user/maniageo/picongpu/.build && /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E cmake_depends "Unix Makefiles" /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu /nfs/dust/atlas/user/maniageo/picongpu/.build /nfs/dust/atlas/user/maniageo/picongpu/.build /nfs/dust/atlas/user/maniageo/picongpu/.build/CMakeFiles/picongpu-hostonly.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/nfs/dust/atlas/user/maniageo/picongpu/.build'
make  -f CMakeFiles/picongpu-hostonly.dir/build.make CMakeFiles/picongpu-hostonly.dir/build
make[2]: Entering directory `/nfs/dust/atlas/user/maniageo/picongpu/.build'
[  4%] Building CXX object CMakeFiles/picongpu-hostonly.dir/ArgsParser.cpp.o
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/g++  -DALPAKA_ACC_GPU_CUDA_ENABLED -DALPAKA_ACC_GPU_CUDA_ONLY_MODE -DALPAKA_DEBUG=0 -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_TR1_WITH_DECLTYPE_FALLBACK -DCMAKE_BUILD_TYPE=Release -DCMAKE_CXX_COMPILER_ID=GNU -DCMAKE_CXX_COMPILER_VERSION=7.3.0 -DCMAKE_SYSTEM=Linux-3.10.0-1127.8.2.el7.x86_64 -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_VERSION=3.17.3 -DCUPLA_STREAM_ASYNC_ENABLED=1 -DENABLE_HDF5=1 -DPIC_ENABLE_PNG=1 -DPIC_VERBOSE_LVL=1 -DPMACC_VERBOSE_LVL=0 -DUSE_FREETYPE -I/nfs/dust/atlas/user/maniageo/picongpu/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/cupla/include -isystem /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/openmpi-3.1.6-vxksgivbiozfatzufhrplqcjvjy54kwz/include -isystem /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/mallocMC/src/include -isystem /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include -isystem /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/zlib-1.2.11-dv2dyqdzikigi76fpjq3ii5aqm3h574z/include -isystem /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/hdf5-1.10.6-6332vbmojonm3nhupnms7e2b4zbxska4/include -isystem /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include -isystem /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/freetype-2.10.1-cpflntfk32rtmgykmdvoio72w367yipb/include/freetype2 -isystem /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/pngwriter-0.7.0-5rceoxaqtjfrytd3yzdnnothehbmbxdp/include -isystem /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libpng-1.6.37-nrwnpqeiypjx75kgam63fa6d6u2lytgx/include  -fopenmp -fopenmp -Wall -Wno-unknown-pragmas -Wextra -Wno-unused-parameter -Wno-unused-local-typedefs -O3 -DNDEBUG   -std=c++11 -ftemplate-depth-512 -Wall -Wextra -Wno-unknown-pragmas -Wno-unused-parameter -Wno-unused-local-typedefs -Wno-attributes -Wno-reorder -Wno-sign-compare -pthread -std=c++11 -o CMakeFiles/picongpu-hostonly.dir/ArgsParser.cpp.o -c /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/ArgsParser.cpp
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/ArgsParser.cpp:64:17: error: 'ArgsErrorCode' in 'class picongpu::ArgsParser' does not name a type
     ArgsParser::ArgsErrorCode ArgsParser::parse( int argc, char** argv )
                 ^~~~~~~~~~~~~
make[2]: *** [CMakeFiles/picongpu-hostonly.dir/ArgsParser.cpp.o] Error 1
make[2]: Leaving directory `/nfs/dust/atlas/user/maniageo/picongpu/.build'
make[1]: *** [CMakeFiles/picongpu-hostonly.dir/all] Error 2
make[1]: Leaving directory `/nfs/dust/atlas/user/maniageo/picongpu/.build'
make: *** [all] Error 2

[Formatting of the logs edited by @sbastrakov]

install

Source

georgi-mania

👍1

All 21 comments

Hello @georgi-mania , thanks for creating the issue!

I am now having a look.
It seems the second output (with verbose=on) was done not on the clean state, but on the directory after the first pic-build was executed. To get a clean state with regard to compiling, one needs to remove the .build directory. Or just to make a fresh one with pic-create. However, I am not sure if this is critical so far, the first log provides some information to start investigating.

sbastrakov on 17 Aug 2020

@sbastrakov the include to /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include is missing. You csn see it in the make VERBOSE=1 output.
The include to the params (input) is there I/nfs/dust/atlas/user/maniageo/picongpu/include

psychocoderHPC on 17 Aug 2020

👍1

IMO for unknown reason https://github.com/ComputationalRadiationPhysics/picongpu/blob/d340812641320d3a61e343a521287fd0720ba55b/include/picongpu/CMakeLists.txt#L381 is missing

psychocoderHPC on 17 Aug 2020

Thank you for investigating it.
@sbastrakov I did a new & clean build as you suggested: first pic-create and then pic-build. Please see the full log below:

[maniageo@batchg002]/nfs/dust/atlas/user/maniageo% pic-create picongpu/share/picongpu/examples/Bremsstrahlung picinputs/myBremsstrahlung
[maniageo@batchg002]/nfs/dust/atlas/user/maniageo% cd picinputs/myBremsstrahlung
[maniageo@batchg002]/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung% pic-build
build directory: .build
cmake command: cmake -DCMAKE_INSTALL_PREFIX=.. -DPIC_EXTENSION_PATH=.. -DALPAKA_ACC_GPU_CUDA_ENABLE=ON -DALPAKA_ACC_GPU_CUDA_ONLY_MODE=ON /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu
-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/gcc
-- Check for working C compiler: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/gcc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/g++
-- Check for working CXX compiler: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/g++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found suitable version "10.0", minimum required is "7.0")
-- ALPAKA_ACC_GPU_CUDA_ONLY_MODE
-- ALPAKA_ACC_GPU_CUDA_ENABLED
-- Found alpaka: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include (found version "0.3.3")
-- _cupla_COMPILE_OPTIONS_PUBLIC: -std=c++11;-ftemplate-depth-512;-Wall;-Wextra;-Wno-unknown-pragmas;-Wno-unused-parameter;-Wno-unused-local-typedefs;-Wno-attributes;-Wno-reorder;-Wno-sign-compare
-- _cupla_COMPILE_DEFINITIONS_PUBLIC: ALPAKA_ACC_GPU_CUDA_ONLY_MODE;ALPAKA_ACC_GPU_CUDA_ENABLED;ALPAKA_DEBUG=0;CUPLA_STREAM_ASYNC_ENABLED=1
-- _cupla_INCLUDE_DIRECTORIES_PUBLIC: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/include;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/cupla/include
-- _cupla_LINK_LIBRARIES_PUBLIC: Boost::boost;general;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/lib64/libcudart.so;general;pthread;general;rt
-- Found cupla: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/cupla/include (found version "0.1.0")
-- Found MPI_C: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/openmpi-3.1.6-vxksgivbiozfatzufhrplqcjvjy54kwz/lib/libmpi.so (found version "3.1")
-- Found MPI_CXX: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/openmpi-3.1.6-vxksgivbiozfatzufhrplqcjvjy54kwz/lib/libmpi.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: filesystem system math_tr1
-- Boost: result_of with TR1 style and decltype fallback
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found suitable version "10.0", minimum required is "5.0")
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.48.0")
-- Using mallocMC from thirdParty/ directory
-- Found mallocMC: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/mallocMC/src (found suitable version "2.3.1", minimum required is "2.3.0")
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found ZLIB: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/zlib-1.2.11-dv2dyqdzikigi76fpjq3ii5aqm3h574z/lib/libz.so (found version "1.2.11")
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: program_options regex filesystem system math_tr1 serialization
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found version "10.0")
-- Found NVML: /usr/lib64/libnvidia-ml.so
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: program_options
-- Can NOT find 'adios_config' - set ADIOS_ROOT or check your PATH
-- Could NOT find ADIOS (missing: ADIOS_LIBRARIES ADIOS_INCLUDE_DIRS) (Required is at least version "1.13.1")
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/hdf5-1.10.6-6332vbmojonm3nhupnms7e2b4zbxska4/lib/libhdf5.so;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/zlib-1.2.11-dv2dyqdzikigi76fpjq3ii5aqm3h574z/lib/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.10.6")
-- Found Splash: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/lib/cmake/Splash
-- Found PNG: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libpng-1.6.37-nrwnpqeiypjx75kgam63fa6d6u2lytgx/lib/libpng.so (found version "1.6.37")
-- Found Freetype: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/freetype-2.10.1-cpflntfk32rtmgykmdvoio72w367yipb/lib/libfreetype.so (found version "2.10.1")
-- Found PNGwriter: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/pngwriter-0.7.0-5rceoxaqtjfrytd3yzdnnothehbmbxdp/lib/cmake/PNGwriter
-- Could NOT find ISAAC - set ISAAC_DIR or check your CMAKE_PREFIX_PATH
CMake Warning (dev) at CMakeLists.txt:376 (set):
implicitly converting 'LIST' to 'STRING' type.
This warning is for project developers. Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done
-- Build files have been written to: /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build
Scanning dependencies of target cupla
[ 8%] Building NVCC (Device) object build_cuda_memtest/CMakeFiles/cuda_memtest.dir/cuda_memtest_generated_tests.cu.o
Scanning dependencies of target mpiInfo
[ 8%] Building NVCC (Device) object build_cuda_memtest/CMakeFiles/cuda_memtest.dir/cuda_memtest_generated_cuda_memtest.cu.o
Scanning dependencies of target picongpu-hostonly
[ 12%] Linking CXX static library libcupla.a
[ 16%] Building CXX object build_mpiInfo/CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o
[ 25%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/misc/removeSpaces.cpp.o
[ 33%] Building CXX object CMakeFiles/picongpu-hostonly.dir/ArgsParser.cpp.o
[ 41%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/common/particlePatches.cpp.o
[ 41%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/common/stringHelpers.cpp.o
[ 41%] Building CXX object CMakeFiles/picongpu-hostonly.dir/random/seed/Seed.cpp.o
[ 41%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/hdf5/openPMD/patchReader.cpp.o
[ 45%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/misc/splitString.cpp.o
[ 45%] Built target cupla
[ 50%] Linking CXX executable mpiInfo
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::typed_value<bool, char>::xparse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const': mpiInfo.cpp:(.text._ZNK5boost15program_options11typed_valueIbcE6xparseERNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISB_EE[_ZNK5boost15program_options11typed_valueIbcE6xparseERNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISB_EE]+0x19): undefined reference toboost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool, int)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::typed_value<bool, char>::name[abi:cxx11]() const': mpiInfo.cpp:(.text._ZNK5boost15program_options11typed_valueIbcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueIbcE4nameB5cxx11Ev]+0x1f): undefined reference toboost::program_options::arg[abi:cxx11]'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > boost::program_options::to_internal<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)': mpiInfo.cpp:(.text._ZN5boost15program_options11to_internalINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIS7_SaIS7_EERKS8_IT_SaISB_EE[_ZN5boost15program_options11to_internalINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIS7_SaIS7_EERKS8_IT_SaISB_EE]+0xac): undefined reference toboost::program_options::to_internal(std::__cxx11::basic_string, std::allocator > const&)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::basic_command_line_parser<char>::basic_command_line_parser(int, char const* const*)': mpiInfo.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x146): undefined reference toboost::program_options::detail::cmdline::cmdline(std::vector, std::allocator >, std::allocator, std::allocator > > > const&)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::basic_parsed_options<char> boost::program_options::parse_command_line<char>(int, char const* const*, boost::program_options::options_description const&, int, boost::function1<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>)': mpiInfo.cpp:(.text._ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESJ_ERKSJ_EE[_ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESJ_ERKSJ_EE]+0xaf): undefined reference toboost::program_options::detail::cmdline::set_additional_parser(boost::function1, std::allocator >, std::__cxx11::basic_string, std::allocator > >, std::__cxx11::basic_string, std::allocator > const&>)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function main': mpiInfo.cpp:(.text.startup+0x52): undefined reference toboost::program_options::options_description::options_description(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueIbcEE[_ZTVN5boost15program_options11typed_valueIbcEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const'
collect2: error: ld returned 1 exit status
make[2]: [build_mpiInfo/mpiInfo] Error 1
make[1]: [build_mpiInfo/CMakeFiles/mpiInfo.dir/all] Error 2
make[1]: Waiting for unfinished jobs....
[ 54%] Linking CXX static library libpicongpu-hostonly.a
[ 54%] Built target picongpu-hostonly
Scanning dependencies of target cuda_memtest
[ 58%] Building CXX object build_cuda_memtest/CMakeFiles/cuda_memtest.dir/misc.cpp.o
[ 62%] Linking CXX executable cuda_memtest
[ 62%] Built target cuda_memtest
make: * [all] Error 2

ERROR: Could not successfully run make install in build directory:
.build

georgi-mania on 17 Aug 2020

👍1

Thanks for another log @georgi-mania .

However, the error on the last one does not match your original error. The original compilation error indeed seems to be caused by one missing include directory as @psychocoderHPC acutely suggested. I am also yet unsure of what caused it.

The last log has another error, that mpiInfo could not link to Boost.program_options. It may be that both errors are present and we just saw what happened quicker.

Sorry to ask again, could you provide yet another log. From the directory of the last build (so picinputs/myBremsstrahlung) in its current state (after pic-build) could you run

cd .build/
make VERBOSE=ON

and provide the output?

sbastrakov on 18 Aug 2020

Of course, @sbastrakov. Please see the log below. Thank you so much for investigating this.

[maniageo@batchg002]/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build% make VERBOSE=ON
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -S/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu -B/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build --check-build-system CMakeFiles/Makefile.cmake 0
Re-run cmake file: Makefile older than: CMakeCache.txt
-- ALPAKA_ACC_GPU_CUDA_ONLY_MODE
-- ALPAKA_ACC_GPU_CUDA_ENABLED
-- _cupla_COMPILE_OPTIONS_PUBLIC: -std=c++11;-ftemplate-depth-512;-Wall;-Wextra;-Wno-unknown-pragmas;-Wno-unused-parameter;-Wno-unused-local-typedefs;-Wno-attributes;-Wno-reorder;-Wno-sign-compare
-- _cupla_COMPILE_DEFINITIONS_PUBLIC: ALPAKA_ACC_GPU_CUDA_ONLY_MODE;ALPAKA_ACC_GPU_CUDA_ENABLED;ALPAKA_DEBUG=0;CUPLA_STREAM_ASYNC_ENABLED=1
-- _cupla_INCLUDE_DIRECTORIES_PUBLIC: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/include;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/cupla/include
-- _cupla_LINK_LIBRARIES_PUBLIC: Boost::boost;general;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/lib64/libcudart.so;general;pthread;general;rt
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: filesystem system math_tr1
-- Boost: result_of with TR1 style and decltype fallback
-- Found OpenMP_C: -fopenmp
-- Found OpenMP_CXX: -fopenmp
-- Found OpenMP: TRUE
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found suitable version "10.0", minimum required is "5.0")
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.48.0")
-- Found OpenMP_C: -fopenmp
-- Found OpenMP_CXX: -fopenmp
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: program_options regex filesystem system math_tr1 serialization
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found version "10.0")
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: program_options
-- Can NOT find 'adios_config' - set ADIOS_ROOT or check your PATH
-- Could NOT find ADIOS (missing: ADIOS_LIBRARIES ADIOS_INCLUDE_DIRS) (Required is at least version "1.13.1")
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found Splash: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/lib/cmake/Splash
-- Found PNGwriter: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/pngwriter-0.7.0-5rceoxaqtjfrytd3yzdnnothehbmbxdp/lib/cmake/PNGwriter
-- Could NOT find ISAAC - set ISAAC_DIR or check your CMAKE_PREFIX_PATH
CMake Warning (dev) at CMakeLists.txt:376 (set):
implicitly converting 'LIST' to 'STRING' type.
This warning is for project developers. Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done
-- Build files have been written to: /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E cmake_progress_start /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build' make -f CMakeFiles/picongpu-hostonly.dir/build.make CMakeFiles/picongpu-hostonly.dir/depend make[2]: Entering directory/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build'
cd /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build && /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E cmake_depends "Unix Makefiles" /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu-hostonly.dir/DependInfo.cmake --color=
make[2]: Leaving directory /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build' make -f CMakeFiles/picongpu-hostonly.dir/build.make CMakeFiles/picongpu-hostonly.dir/build make[2]: Entering directory/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build'
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[ 33%] Built target picongpu-hostonly
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make[2]: Entering directory `/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build'
[ 37%] Building NVCC (Device) object CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_stream.cpp.o
cd /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src && /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E make_directory /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/.
cd /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src && /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -D verbose:BOOL=ON -D build_configuration:STRING=Release -D generated_file:STRING=/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/./picongpu_generated_stream.cpp.o -D generated_cubin_file:STRING=/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/./picongpu_generated_stream.cpp.o.cubin.txt -P /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_stream.cpp.o.Release.cmake
-- Removing /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/./picongpu_generated_stream.cpp.o
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E rm -f /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/./picongpu_generated_stream.cpp.o
-- Generating dependency file: /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_stream.cpp.o.NVCC-depend
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-- Generating /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/./picongpu_generated_stream.cpp.o
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Generated /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/./picongpu_generated_stream.cpp.o successfully.
[ 41%] Building NVCC (Device) object CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o
cd /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir && /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E make_directory /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir//.
cd /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir && /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -D verbose:BOOL=ON -D build_configuration:STRING=Release -D generated_file:STRING=/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir//./picongpu_generated_main.cpp.o -D generated_cubin_file:STRING=/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir//./picongpu_generated_main.cpp.o.cubin.txt -P /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir//picongpu_generated_main.cpp.o.Release.cmake
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/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E rm -f /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir//./picongpu_generated_main.cpp.o
-- Generating dependency file: /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir//picongpu_generated_main.cpp.o.NVCC-depend
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/bin/nvcc -M -D__CUDACC__ /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/main.cpp -o /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir//picongpu_generated_main.cpp.o.NVCC-depend -ccbin /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/g++ -m64 -DBOOST_RESULT_OF_USE_TR1_WITH_DECLTYPE_FALLBACK -DPMACC_VERBOSE_LVL=0 -DPIC_VERBOSE_LVL=1 -DCMAKE_VERSION=3.17.3 -DCMAKE_BUILD_TYPE=Release -DCMAKE_SYSTEM=Linux-3.10.0-1127.8.2.el7.x86_64 -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_CXX_COMPILER_ID=GNU -DCMAKE_CXX_COMPILER_VERSION=7.3.0 -DENABLE_HDF5=1 -DPIC_ENABLE_PNG=1 -DALPAKA_ACC_GPU_CUDA_ONLY_MODE -DALPAKA_ACC_GPU_CUDA_ENABLED -DALPAKA_DEBUG=0 -DCUPLA_STREAM_ASYNC_ENABLED=1 -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_MATH_TR1_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DUSE_FREETYPE -Xcompiler ,\"-fopenmp\",\"-fopenmp\",\"-Wall\",\"-Wno-unknown-pragmas\",\"-Wextra\",\"-Wno-unused-parameter\",\"-Wno-unused-local-typedefs\",\"-O3\",\"-DNDEBUG\" --expt-extended-lambda --expt-relaxed-constexpr --generate-code arch=compute_30,code=sm_30 --generate-code arch=compute_30,code=compute_30 -std=c++11 --use_fast_math --ftz=false -DNVCC -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/include -I/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/openmpi-3.1.6-vxksgivbiozfatzufhrplqcjvjy54kwz/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/mallocMC/src/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/pmacc/.. -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/.. -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/cupla/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/zlib-1.2.11-dv2dyqdzikigi76fpjq3ii5aqm3h574z/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/hdf5-1.10.6-6332vbmojonm3nhupnms7e2b4zbxska4/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/freetype-2.10.1-cpflntfk32rtmgykmdvoio72w367yipb/include/freetype2 -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/pngwriter-0.7.0-5rceoxaqtjfrytd3yzdnnothehbmbxdp/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libpng-1.6.37-nrwnpqeiypjx75kgam63fa6d6u2lytgx/include
In file included from /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/_defaultParam.loader:53:0,
from /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/simulation_defines.hpp:40,
from /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/main.cpp:24:
/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/include/picongpu/param/speciesDefinition.param:26:10: fatal error: pmacc/meta/conversion/MakeSeq.hpp: No such file or directory
#include
^~~~~~~~~~~
compilation terminated.
CMake Error at picongpu_generated_main.cpp.o.Release.cmake:220 (message):
Error generating
/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build/CMakeFiles/picongpu.dir//./picongpu_generated_main.cpp.o

make[2]: * [CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o] Error 1
make[2]: Leaving directory /nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build' make[1]: *** [CMakeFiles/picongpu.dir/all] Error 2 make[1]: Leaving directory/nfs/dust/atlas/user/maniageo/picinputs/myBremsstrahlung/.build'
make: * [all] Error 2

georgi-mania on 18 Aug 2020

👍1

Thanks @georgi-mania .

I think this may be unrelated to the original issue, but is also an issue to be solved nonetheless.

You seem to be using a Bremsstrahlung setup from PIConGPU 0.5.0, or at least some version that is definitely after 0.4.3. I can see this as the #include <pmacc/meta/conversion/MakeSeq.hpp> file which is part of one error was renamed between 0.4.3 and 0.5.0. The 0.4.3 setup would have #include <pmacc/compileTime/conversion/MakeSeq.hpp> instead, as you can see here.

Could you check that the pic-create is using the share/picongpu/examples/... from the 0.4.3 PIConGPU directory, not from 0.5.0 or dev

sbastrakov on 18 Aug 2020

As an add up, we released 0.5.0 at start of this summer, but unfortunately still lack spack support for it. Hence for spack setup one has to still use PIConGPU 0.4.3 for now, until we extend it to 0.5.0.

sbastrakov on 18 Aug 2020

Yes, you are right. I installed the setup through spack and then cloned the master version of the picongpu repository.
Since I have set the dependencies for 0.4.3, I now cloned the tag 0.4.3 to retrieve the corresponding example:
git clone --depth 1 --branch 0.4.3 https://github.com/ComputationalRadiationPhysics/picongpu.git

The pic-build fails for the example copied from this tag too. The problem is that now, running make VERBOSE=ON not only fails but closes my SSH connection to the cluster. I tested this 2 times. Maybe the RAM memory needed for the build is larger than my quota? Or have you ever seen a similar problem?

I'm posting the log for as much as I can see it below:

[maniageo@batchg002]/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3% pic-build
build directory: .build
cmake command: cmake -DCMAKE_INSTALL_PREFIX=.. -DPIC_EXTENSION_PATH=.. -DALPAKA_ACC_GPU_CUDA_ENABLE=ON -DALPAKA_ACC_GPU_CUDA_ONLY_MODE=ON /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu
-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/gcc
-- Check for working C compiler: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/gcc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/g++
-- Check for working CXX compiler: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/g++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found suitable version "10.0", minimum required is "7.0")
-- ALPAKA_ACC_GPU_CUDA_ONLY_MODE
-- ALPAKA_ACC_GPU_CUDA_ENABLED
-- Found alpaka: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include (found version "0.3.3")
-- _cupla_COMPILE_OPTIONS_PUBLIC: -std=c++11;-ftemplate-depth-512;-Wall;-Wextra;-Wno-unknown-pragmas;-Wno-unused-parameter;-Wno-unused-local-typedefs;-Wno-attributes;-Wno-reorder;-Wno-sign-compare
-- _cupla_COMPILE_DEFINITIONS_PUBLIC: ALPAKA_ACC_GPU_CUDA_ONLY_MODE;ALPAKA_ACC_GPU_CUDA_ENABLED;ALPAKA_DEBUG=0;CUPLA_STREAM_ASYNC_ENABLED=1
-- _cupla_INCLUDE_DIRECTORIES_PUBLIC: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/include;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/cupla/include
-- _cupla_LINK_LIBRARIES_PUBLIC: Boost::boost;general;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/lib64/libcudart.so;general;pthread;general;rt
-- Found cupla: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/cupla/include (found version "0.1.0")
-- Found MPI_C: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/openmpi-3.1.6-vxksgivbiozfatzufhrplqcjvjy54kwz/lib/libmpi.so (found version "3.1")
-- Found MPI_CXX: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/openmpi-3.1.6-vxksgivbiozfatzufhrplqcjvjy54kwz/lib/libmpi.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: filesystem system math_tr1
-- Boost: result_of with TR1 style and decltype fallback
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found suitable version "10.0", minimum required is "5.0")
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.48.0")
-- Using mallocMC from thirdParty/ directory
-- Found mallocMC: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/mallocMC/src (found suitable version "2.3.1", minimum required is "2.3.0")
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found ZLIB: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/zlib-1.2.11-dv2dyqdzikigi76fpjq3ii5aqm3h574z/lib/libz.so (found version "1.2.11")
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: program_options regex filesystem system math_tr1 serialization
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found version "10.0")
-- Found NVML: /usr/lib64/libnvidia-ml.so
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: program_options
-- Can NOT find 'adios_config' - set ADIOS_ROOT or check your PATH
-- Could NOT find ADIOS (missing: ADIOS_LIBRARIES ADIOS_INCLUDE_DIRS) (Required is at least version "1.13.1")
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/hdf5-1.10.6-6332vbmojonm3nhupnms7e2b4zbxska4/lib/libhdf5.so;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/zlib-1.2.11-dv2dyqdzikigi76fpjq3ii5aqm3h574z/lib/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.10.6")
-- Found Splash: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/lib/cmake/Splash
-- Found PNG: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libpng-1.6.37-nrwnpqeiypjx75kgam63fa6d6u2lytgx/lib/libpng.so (found version "1.6.37")
-- Found Freetype: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/freetype-2.10.1-cpflntfk32rtmgykmdvoio72w367yipb/lib/libfreetype.so (found version "2.10.1")
-- Found PNGwriter: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/pngwriter-0.7.0-5rceoxaqtjfrytd3yzdnnothehbmbxdp/lib/cmake/PNGwriter
-- Could NOT find ISAAC - set ISAAC_DIR or check your CMAKE_PREFIX_PATH
CMake Warning (dev) at CMakeLists.txt:376 (set):
implicitly converting 'LIST' to 'STRING' type.
This warning is for project developers. Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done
-- Build files have been written to: /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build
Scanning dependencies of target picongpu-hostonly
[ 4%] Building NVCC (Device) object build_cuda_memtest/CMakeFiles/cuda_memtest.dir/cuda_memtest_generated_cuda_memtest.cu.o
Scanning dependencies of target cupla
[ 8%] Building NVCC (Device) object build_cuda_memtest/CMakeFiles/cuda_memtest.dir/cuda_memtest_generated_tests.cu.o
Scanning dependencies of target mpiInfo
[ 12%] Linking CXX static library libcupla.a
[ 20%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/hdf5/openPMD/patchReader.cpp.o
[ 37%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/misc/splitString.cpp.o
[ 33%] Building CXX object build_mpiInfo/CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o
[ 41%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/misc/removeSpaces.cpp.o
[ 45%] Building CXX object CMakeFiles/picongpu-hostonly.dir/ArgsParser.cpp.o
[ 45%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/common/particlePatches.cpp.o
[ 45%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/common/stringHelpers.cpp.o
[ 45%] Building CXX object CMakeFiles/picongpu-hostonly.dir/random/seed/Seed.cpp.o
[ 45%] Built target cupla
[ 50%] Linking CXX executable mpiInfo
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::typed_value<bool, char>::xparse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const': mpiInfo.cpp:(.text._ZNK5boost15program_options11typed_valueIbcE6xparseERNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISB_EE[_ZNK5boost15program_options11typed_valueIbcE6xparseERNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISB_EE]+0x19): undefined reference toboost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool, int)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::typed_value<bool, char>::name[abi:cxx11]() const': mpiInfo.cpp:(.text._ZNK5boost15program_options11typed_valueIbcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueIbcE4nameB5cxx11Ev]+0x1f): undefined reference toboost::program_options::arg[abi:cxx11]'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > boost::program_options::to_internal<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)': mpiInfo.cpp:(.text._ZN5boost15program_options11to_internalINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIS7_SaIS7_EERKS8_IT_SaISB_EE[_ZN5boost15program_options11to_internalINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIS7_SaIS7_EERKS8_IT_SaISB_EE]+0xac): undefined reference toboost::program_options::to_internal(std::__cxx11::basic_string, std::allocator > const&)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::basic_command_line_parser<char>::basic_command_line_parser(int, char const* const*)': mpiInfo.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x146): undefined reference toboost::program_options::detail::cmdline::cmdline(std::vector, std::allocator >, std::allocator, std::allocator > > > const&)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::basic_parsed_options<char> boost::program_options::parse_command_line<char>(int, char const* const*, boost::program_options::options_description const&, int, boost::function1<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>)': mpiInfo.cpp:(.text._ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESJ_ERKSJ_EE[_ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESJ_ERKSJ_EE]+0xaf): undefined reference toboost::program_options::detail::cmdline::set_additional_parser(boost::function1, std::allocator >, std::__cxx11::basic_string, std::allocator > >, std::__cxx11::basic_string, std::allocator > const&>)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function main': mpiInfo.cpp:(.text.startup+0x52): undefined reference toboost::program_options::options_description::options_description(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueIbcEE[_ZTVN5boost15program_options11typed_valueIbcEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const'
collect2: error: ld returned 1 exit status
make[2]: [build_mpiInfo/mpiInfo] Error 1
make[1]: [build_mpiInfo/CMakeFiles/mpiInfo.dir/all] Error 2
make[1]: Waiting for unfinished jobs....
[ 54%] Linking CXX static library libpicongpu-hostonly.a
[ 54%] Built target picongpu-hostonly
Scanning dependencies of target cuda_memtest
[ 58%] Building CXX object build_cuda_memtest/CMakeFiles/cuda_memtest.dir/misc.cpp.o
[ 62%] Linking CXX executable cuda_memtest
[ 62%] Built target cuda_memtest
make: * [all] Error 2

ERROR: Could not successfully run make install in build directory:
.build

[maniageo@batchg002]/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3% cd .build
[maniageo@batchg002]/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build% make VERBOSE=ON
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -S/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu -B/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build --check-build-system CMakeFiles/Makefile.cmake 0
Re-run cmake file: Makefile older than: build_cuda_memtest/CMakeFiles/cuda_memtest.dir/cuda_memtest_generated_cuda_memtest.cu.o.depend
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found suitable version "10.0", minimum required is "7.0")
-- ALPAKA_ACC_GPU_CUDA_ONLY_MODE
-- ALPAKA_ACC_GPU_CUDA_ENABLED
-- _cupla_COMPILE_OPTIONS_PUBLIC: -std=c++11;-ftemplate-depth-512;-Wall;-Wextra;-Wno-unknown-pragmas;-Wno-unused-parameter;-Wno-unused-local-typedefs;-Wno-attributes;-Wno-reorder;-Wno-sign-compare
-- _cupla_COMPILE_DEFINITIONS_PUBLIC: ALPAKA_ACC_GPU_CUDA_ONLY_MODE;ALPAKA_ACC_GPU_CUDA_ENABLED;ALPAKA_DEBUG=0;CUPLA_STREAM_ASYNC_ENABLED=1
-- _cupla_INCLUDE_DIRECTORIES_PUBLIC: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/include;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/cupla/include
-- _cupla_LINK_LIBRARIES_PUBLIC: Boost::boost;general;/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/lib64/libcudart.so;general;pthread;general;rt
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: filesystem system math_tr1
-- Boost: result_of with TR1 style and decltype fallback
-- Found OpenMP_C: -fopenmp
-- Found OpenMP_CXX: -fopenmp
-- Found OpenMP: TRUE
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found suitable version "10.0", minimum required is "5.0")
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.48.0")
-- Found OpenMP_C: -fopenmp
-- Found OpenMP_CXX: -fopenmp
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: program_options regex filesystem system math_tr1 serialization
-- Found CUDA: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x (found version "10.0")
-- Found Boost: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable version "1.73.0", minimum required is "1.62.0") found components: program_options
-- Can NOT find 'adios_config' - set ADIOS_ROOT or check your PATH
-- Could NOT find ADIOS (missing: ADIOS_LIBRARIES ADIOS_INCLUDE_DIRS) (Required is at least version "1.13.1")
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found Splash: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/lib/cmake/Splash
-- Found PNGwriter: /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/pngwriter-0.7.0-5rceoxaqtjfrytd3yzdnnothehbmbxdp/lib/cmake/PNGwriter
-- Could NOT find ISAAC - set ISAAC_DIR or check your CMAKE_PREFIX_PATH
CMake Warning (dev) at CMakeLists.txt:376 (set):
implicitly converting 'LIST' to 'STRING' type.
This warning is for project developers. Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done
-- Build files have been written to: /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E cmake_progress_start /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build' make -f CMakeFiles/picongpu-hostonly.dir/build.make CMakeFiles/picongpu-hostonly.dir/depend make[2]: Entering directory/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build'
cd /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build && /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E cmake_depends "Unix Makefiles" /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu-hostonly.dir/DependInfo.cmake --color=
make[2]: Leaving directory /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build' make -f CMakeFiles/picongpu-hostonly.dir/build.make CMakeFiles/picongpu-hostonly.dir/build make[2]: Entering directory/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build'
make[2]: Nothing to be done for CMakeFiles/picongpu-hostonly.dir/build'. make[2]: Leaving directory/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build'
[ 33%] Built target picongpu-hostonly
make -f CMakeFiles/picongpu.dir/build.make CMakeFiles/picongpu.dir/depend
make[2]: Entering directory `/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build'
[ 37%] Building NVCC (Device) object CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_stream.cpp.o
cd /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src && /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E make_directory /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/.
cd /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src && /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -D verbose:BOOL=ON -D build_configuration:STRING=Release -D generated_file:STRING=/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/./picongpu_generated_stream.cpp.o -D generated_cubin_file:STRING=/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/./picongpu_generated_stream.cpp.o.cubin.txt -P /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_stream.cpp.o.Release.cmake
-- Removing /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/./picongpu_generated_stream.cpp.o
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cmake-3.17.3-ed5iornwqdutq3ryvwvxsdfnqtol3alw/bin/cmake -E rm -f /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/./picongpu_generated_stream.cpp.o
-- Generating dependency file: /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_stream.cpp.o.NVCC-depend
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/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/bin/nvcc /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/main.cpp -x=cu -c -o /nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/.build/CMakeFiles/picongpu.dir//./picongpu_generated_main.cpp.o -ccbin /nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/gcc-7.3.0-zg6wvh72g4pj62nztj2goq43rhtoxqyu/bin/g++ -m64 -DBOOST_RESULT_OF_USE_TR1_WITH_DECLTYPE_FALLBACK -DPMACC_VERBOSE_LVL=0 -DPIC_VERBOSE_LVL=1 -DCMAKE_VERSION=3.17.3 -DCMAKE_BUILD_TYPE=Release -DCMAKE_SYSTEM=Linux-3.10.0-1127.8.2.el7.x86_64 -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_CXX_COMPILER_ID=GNU -DCMAKE_CXX_COMPILER_VERSION=7.3.0 -DENABLE_HDF5=1 -DPIC_ENABLE_PNG=1 -DALPAKA_ACC_GPU_CUDA_ONLY_MODE -DALPAKA_ACC_GPU_CUDA_ENABLED -DALPAKA_DEBUG=0 -DCUPLA_STREAM_ASYNC_ENABLED=1 -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_MATH_TR1_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DUSE_FREETYPE -Xcompiler ,\"-fopenmp\",\"-fopenmp\",\"-Wall\",\"-Wno-unknown-pragmas\",\"-Wextra\",\"-Wno-unused-parameter\",\"-Wno-unused-local-typedefs\",\"-O3\",\"-DNDEBUG\" --expt-extended-lambda --expt-relaxed-constexpr --generate-code arch=compute_30,code=sm_30 --generate-code arch=compute_30,code=compute_30 -std=c++11 --use_fast_math --ftz=false -DNVCC -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/cuda-10.0.130-oejbgwew7gcs7imbatzcn7yp5chlaq6x/include -I/nfs/dust/atlas/user/maniageo/picinputs/bremstrahlung-0.4.3/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/openmpi-3.1.6-vxksgivbiozfatzufhrplqcjvjy54kwz/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/mallocMC/src/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/pmacc/.. -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/picongpu/.. -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/cupla/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/zlib-1.2.11-dv2dyqdzikigi76fpjq3ii5aqm3h574z/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/hdf5-1.10.6-6332vbmojonm3nhupnms7e2b4zbxska4/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/freetype-2.10.1-cpflntfk32rtmgykmdvoio72w367yipb/include/freetype2 -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/pngwriter-0.7.0-5rceoxaqtjfrytd3yzdnnothehbmbxdp/include -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libpng-1.6.37-nrwnpqeiypjx75kgam63fa6d6u2lytgx/include
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/pmacc/particles/memory/dataTypes/Particle.hpp(167): warning: __device__ annotation is ignored on a function("operator=") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/pmacc/particles/memory/dataTypes/Particle.hpp(167): warning: __host__ annotation is ignored on a function("operator=") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(25): warning: __host__ annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(25): warning: __device__ annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(31): warning: __host__ annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(31): warning: __device__ annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(195): warning: __host__ annotation is ignored on a function("vector_data") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(195): warning: __device__ annotation is ignored on a function("vector_data") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(273): warning: __host__ annotation is ignored on a function("vector") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(273): warning: __device__ annotation is ignored on a function("vector") that is explicitly defaulted on its first declaration

Connection to condor-job.batchg002.desy.de closed by remote host.

georgi-mania on 18 Aug 2020

👍1

Thanks for the log.
Unfortunately, I can't yet reproduce the issue on our system when using spack and following the docs. (For me it builds then).

However, looking at your log, it seems that Boost was found properly, including the program_options library, but somehow the linker fails to find some definitions. Those definitions are all for C++11 ABI, which may hint to ABI mismatch between how the Boost was compiled and how our code is compiled. E.g. as discussed here. You could try adding the corresponding flag manually, for gcc it is
-D_GLIBCXX_USE_CXX11_ABI=0. To do so with our cmake infrastructure, you need to add this line
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D_GLIBCXX_USE_CXX11_ABI=0")
in two places (variable $PICSRC is from our spack environment, which has to be loaded):

In file $PICSRC/include/mpiInfo/CMakeLists.txt e.g. at line 107, just before add_executable
In file $PICSRC/include/picongpu/CMakeLists.txt e.g. after line 278, just before

# ICC
elseif

and then try to re-build. I am not sure this helps, but so far it's my only idea.

Regarding SSH termination, I am not sure why it happens. It is true that building PIConGPU takes a lot of resources, but I would not assume it should cause such an effect.

sbastrakov on 18 Aug 2020

Thank you for the suggestion, @sbastrakov . I added the flag in both CMake files, removed the .build directory and tried a clean build. Unfortunately I get the same error (somehow related to mpi).

Regarding the SSH termination, the default build config uses 3x more memory than my user quota on the cluster. I reduced the number of parallel threads for cmake and that solved this problem.

georgi-mania on 19 Aug 2020

I believe none of the previous errors concerned MPI, could you post a log? Sorry for asking this at each step, but since I am not able to reproduce the error, we have to resort to this slow remote debugging.

sbastrakov on 19 Aug 2020

Sure @sbastrakov . Here it is the latest clean buildlog:

make -j 2 install
Scanning dependencies of target picongpu-hostonly
Scanning dependencies of target cupla
[ 4%] Linking CXX static library libcupla.a
[ 8%] Building CXX object CMakeFiles/picongpu-hostonly.dir/ArgsParser.cpp.o
[ 8%] Built target cupla
[ 12%] Building NVCC (Device) object build_cuda_memtest/CMakeFiles/cuda_memtest.dir/cuda_memtest_generated_cuda_memtest.cu.o
[ 16%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/common/particlePatches.cpp.o
[ 20%] Building NVCC (Device) object build_cuda_memtest/CMakeFiles/cuda_memtest.dir/cuda_memtest_generated_tests.cu.o
[ 25%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/common/stringHelpers.cpp.o
[ 29%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/hdf5/openPMD/patchReader.cpp.o
[ 33%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/misc/removeSpaces.cpp.o
[ 37%] Building CXX object CMakeFiles/picongpu-hostonly.dir/plugins/misc/splitString.cpp.o
Scanning dependencies of target cuda_memtest
[ 41%] Building CXX object build_cuda_memtest/CMakeFiles/cuda_memtest.dir/misc.cpp.o
[ 45%] Building CXX object CMakeFiles/picongpu-hostonly.dir/random/seed/Seed.cpp.o
[ 50%] Linking CXX executable cuda_memtest
[ 50%] Built target cuda_memtest
Scanning dependencies of target mpiInfo
[ 54%] Building CXX object build_mpiInfo/CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o
[ 58%] Linking CXX static library libpicongpu-hostonly.a
[ 58%] Built target picongpu-hostonly
[ 62%] Building NVCC (Device) object CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_stream.cpp.o
[ 66%] Linking CXX executable mpiInfo
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::typed_value<bool, char>::xparse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const': mpiInfo.cpp:(.text._ZNK5boost15program_options11typed_valueIbcE6xparseERNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISB_EE[_ZNK5boost15program_options11typed_valueIbcE6xparseERNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISB_EE]+0x19): undefined reference toboost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool, int)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::typed_value<bool, char>::name[abi:cxx11]() const': mpiInfo.cpp:(.text._ZNK5boost15program_options11typed_valueIbcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueIbcE4nameB5cxx11Ev]+0x1f): undefined reference toboost::program_options::arg[abi:cxx11]'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > boost::program_options::to_internal<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)': mpiInfo.cpp:(.text._ZN5boost15program_options11to_internalINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIS7_SaIS7_EERKS8_IT_SaISB_EE[_ZN5boost15program_options11to_internalINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIS7_SaIS7_EERKS8_IT_SaISB_EE]+0xac): undefined reference toboost::program_options::to_internal(std::__cxx11::basic_string, std::allocator > const&)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::basic_command_line_parser<char>::basic_command_line_parser(int, char const* const*)': mpiInfo.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x146): undefined reference toboost::program_options::detail::cmdline::cmdline(std::vector, std::allocator >, std::allocator, std::allocator > > > const&)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function boost::program_options::basic_parsed_options<char> boost::program_options::parse_command_line<char>(int, char const* const*, boost::program_options::options_description const&, int, boost::function1<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>)': mpiInfo.cpp:(.text._ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESJ_ERKSJ_EE[_ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESJ_ERKSJ_EE]+0xaf): undefined reference toboost::program_options::detail::cmdline::set_additional_parser(boost::function1, std::allocator >, std::__cxx11::basic_string, std::allocator > >, std::__cxx11::basic_string, std::allocator > const&>)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o: In function main': mpiInfo.cpp:(.text.startup+0x52): undefined reference toboost::program_options::options_description::options_description(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int)'
CMakeFiles/mpiInfo.dir/mpiInfo.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueIbcEE[_ZTVN5boost15program_options11typed_valueIbcEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const'
collect2: error: ld returned 1 exit status
make[2]: [build_mpiInfo/mpiInfo] Error 1
make[1]: [build_mpiInfo/CMakeFiles/mpiInfo.dir/all] Error 2
make[1]: ** Waiting for unfinished jobs....
[ 70%] Building NVCC (Device) object CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o
[ 75%] Building NVCC (Device) object CMakeFiles/picongpu.dir/picongpu_generated_versionFormat.cpp.o
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/AttributeInfo.hpp:64:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getMemSize() throw(DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/AttributeInfo.hpp:66:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const CollectionType& getType() throw(DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/AttributeInfo.hpp:68:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Dimensions getDims() throw(DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/AttributeInfo.hpp:70:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
uint32_t getNDims() throw(DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/AttributeInfo.hpp:72:17: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isScalar() throw(DCException){ return getNDims() == 1 && getDims().getScalarSize() == 1; }
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/AttributeInfo.hpp:75:18: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isVarSize() throw(DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/AttributeInfo.hpp:88:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(const CollectionType& colType, void* buf) throw(DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/AttributeInfo.hpp:113:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(void* buf, size_t bufSize) throw(DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/AttributeInfo.hpp:127:17: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void loadType() throw(DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/AttributeInfo.hpp:128:18: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void loadSpace() throw(DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:76:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool open(hid_t group) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:81:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void close() throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:93:132: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void create(const CollectionType& colType, hid_t group, const Dimensions size,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:102:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void createReference(hid_t refGroup, hid_t srcGroup, DCDataSet &srcDataSet)
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:114:134: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void createReference(hid_t refGroup, hid_t srcGroup, DCDataSet &srcDataSet,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:126:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(Selection srcSelect, Dimensions dstOffset, const void* data) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:137:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(Dimensions dstBuffer,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:154:153: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(Dimensions dstBuffer,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:172:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void append(size_t count,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:191:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
hid_t getDataSpace() throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:207:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DCDataType getDCDataType() throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:214:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getDataTypeSize() throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:229:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setChunking(size_t typeSize) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/DCDataSet.hpp:230:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setCompression() throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/HandleMgr.hpp:102:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setFileNameScheme(FileNameScheme fileNameScheme) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/HandleMgr.hpp:111:113: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void open(Dimensions mpiSize, const std::string baseFilename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/HandleMgr.hpp:121:93: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void open(const std::string fullFilename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/HandleMgr.hpp:134:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
H5Handle get(uint32_t index) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/core/HandleMgr.hpp:141:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
H5Handle get(Dimensions mpiPos) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:74:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getFullFilename(const Dimensions mpiPos, std::string baseFilename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:90:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void openCustomGroup(DCGroup& group, Dimensions mpiPosition = NULL) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:92:95: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
hid_t openGroup(DCGroup& group, int32_t id, const char name,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:123:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void openCreate(const char filename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:126:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void openRead(const char *filename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:129:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void openWrite(const char *filename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:132:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void openMerge(const char *filename) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:145:158: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readMerged(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:163:213: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readCompleteDataSet(H5Handle h5File,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:177:231: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readDataSet(H5Handle h5File,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:191:208: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
CollectionType readDataSetMeta(H5Handle h5File,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:200:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readSizeInternal(H5Handle h5File,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:208:143: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeDataSet(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:221:148: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void appendDataSet(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:230:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
hid_t openDatasetHandle(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:234:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void closeDatasetHandle(hid_t handle) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:248:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void open(const char filename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:257:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void getEntryIDs(int32_t *ids, size_t *count) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:259:77: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void getEntriesForID(int32_t id, DCEntry *entries, size_t *count) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:261:139: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:268:114: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void append(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:274:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void append(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:282:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void remove(int32_t id) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:284:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void remove(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:287:104: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void createReference(int32_t srcID,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:292:160: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void createReference(int32_t srcID,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:300:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
AttributeInfo readGlobalAttributeInfo(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:306:83: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readGlobalAttribute(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:311:102: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeGlobalAttribute(const CollectionType& type,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:315:141: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeGlobalAttribute(const CollectionType& type,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:321:129: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
AttributeInfo readAttributeInfo(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:327:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readAttribute(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:333:135: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeAttribute(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:339:174: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeAttribute(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:347:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:352:142: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/SerialDataCollector.hpp:359:144: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
CollectionType readMeta(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/domains/DomainData.hpp:192:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getFormatString() throw (DCException)
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:65:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Domain getGlobalDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:68:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Domain getLocalDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:71:130: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataContainer readDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:77:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readDomainLazy(DomainData *domainData) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:79:221: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:89:172: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void appendDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:97:204: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void appendDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:108:147: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeDomainAttributes(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:115:132: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool readDomainInfoForRank(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:122:183: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool readDomainDataForRank(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:131:168: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readGridInternal(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:139:182: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readPolyInternal(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:148:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readGlobalSizeFallback(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/DomainCollector.hpp:153:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readGlobalOffsetFallback(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:72:133: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static void listFilesInDir(const std::string baseFilename, std::set &ids)
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:75:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
hid_t openGroup(DCGroup& group, int32_t id, const char dataName) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:115:101: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static void writeHeader(hid_t fHandle, uint32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:118:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static void fileCreateCallback(H5Handle handle, uint32_t index,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:121:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static void fileOpenCallback(H5Handle handle, uint32_t index,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:124:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void openCreate(const char filename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:127:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void openRead(const char *filename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:130:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void openWrite(const char *filename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:133:213: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readCompleteDataSet(H5Handle h5File,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:143:231: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readDataSet(H5Handle h5File,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:154:208: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeDataSet(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:164:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void gatherMPIWrites(int rank, const Dimensions localSize,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:178:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void reserveInternal(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:202:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void open(const char *filename,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:211:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void getEntryIDs(int32_t *ids, size_t *count) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:213:77: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void getEntriesForID(int32_t id, DCEntry *entries, size_t *count) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:215:137: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:231:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void reserve(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:237:172: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void reserve(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:252:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void remove(int32_t id) throw (DCException);
^~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:254:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void remove(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:257:104: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void createReference(int32_t srcID,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:262:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
AttributeInfo readGlobalAttributeInfo(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:267:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readGlobalAttribute(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:271:113: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeGlobalAttribute(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:276:152: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeGlobalAttribute(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:283:129: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
AttributeInfo readAttributeInfo(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:289:115: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readAttribute(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:295:134: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeAttribute(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:301:173: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeAttribute(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:309:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:314:141: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:321:144: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
CollectionType readMeta(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:339:136: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:360:192: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:376:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readGlobalAttribute(const char,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:380:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeGlobalAttribute(const CollectionType& /type/,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:384:115: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeGlobalAttribute(const CollectionType& /type/,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:390:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void append(int32_t /id/,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:396:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void append(int32_t /id/,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:404:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void createReference(int32_t /srcID/,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDataCollector.hpp:417:208: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
CollectionType readDataSetMeta(H5Handle h5File,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:81:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Domain getGlobalDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:91:62: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Domain getLocalDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:94:143: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataContainer *readDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:100:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void readDomainLazy(DomainData *domainData) throw (DCException);
^~~~~
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:102:221: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:112:255: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void writeDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:123:178: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void reserveDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:131:224: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void reserveDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:143:170: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool readDomainDataForRank(
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:151:172: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void appendDomain(int32_t id,
^
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-3gjeltqzg3s6niyt36lcq2evpoaxqjnq/include/splash/ParallelDomainCollector.hpp:159:204: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void appendDomain(int32_t id,
^
[ 79%] Building NVCC (Device) object CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_common.cpp.o
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/pmacc/particles/memory/dataTypes/Particle.hpp(167): warning: __device__ annotation is ignored on a function("operator=") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(25): warning: __device__ annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(31): warning: __host__ annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(31): warning: __device__ annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(195): warning: __host__ annotation is ignored on a function("vector_data") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(195): warning: __device__ annotation is ignored on a function("vector_data") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(273): warning: __host__ annotation is ignored on a function("vector") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(273): warning: __device__ annotation is ignored on a function("vector") that is explicitly defaulted on its first declaration

[ 83%] Building NVCC (Device) object CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_device.cpp.o
[ 87%] Building NVCC (Device) object CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_event.cpp.o
[ 91%] Building NVCC (Device) object CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/manager/picongpu_generated_Driver.cpp.o
[ 95%] Building NVCC (Device) object CMakeFiles/picongpu.dir/__/__/thirdParty/cupla/src/picongpu_generated_memory.cpp.o
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include/alpaka/vec/Vec.hpp(924): warning: calling a __host__ function("std::__shared_count<( ::__gnu_cxx::_Lock_policy)2> ::__shared_count") from a __host__ __device__ function("alpaka::dev::DevCpu::DevCpu") is not allowed

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/thirdParty/alpaka/include/alpaka/vec/Vec.hpp(924): warning: calling a __host__ function("std::__shared_count<( ::__gnu_cxx::_Lock_policy)2> ::__shared_count") from a __host__ __device__ function("alpaka::dev::DevCpu::DevCpu [subobject]") is not allowed

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/picongpu-0.4.3-mhq6gednwt3qidk6ncd7olohrbogiaf4/include/pmacc/particles/memory/dataTypes/Particle.hpp(167): warning: __device__ annotation is ignored on a function("operator=") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(25): warning: __device__ annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(31): warning: __host__ annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(31): warning: __device__ annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(195): warning: __host__ annotation is ignored on a function("vector_data") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(195): warning: __device__ annotation is ignored on a function("vector_data") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(273): warning: __host__ annotation is ignored on a function("vector") that is explicitly defaulted on its first declaration

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/container/vector/vector.hpp(273): warning: __device__ annotation is ignored on a function("vector") that is explicitly defaulted on its first declaration

Scanning dependencies of target picongpu
[100%] Linking CXX executable picongpu
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In function boost::re_detail_107000::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::unwind_extra_block(bool)': tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE18unwind_extra_blockEb[_ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE18unwind_extra_blockEb]+0x22): undefined reference toboost::re_detail_107000::put_mem_block(void)'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In function boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)': tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x25): undefined reference toboost::program_options::validation_error::get_templateabi:cxx11'
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x3d): undefined reference to boost::program_options::error_with_option_name::error_with_option_name(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionboost::program_options::typed_value, std::allocator >, char>::xparse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) const':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE]+0x17): undefined reference to boost::program_options::validate(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, int)' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionboost::program_options::typed_value::xparse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) const':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZNK5boost15program_options11typed_valueIbcE6xparseERNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISB_EE[_ZNK5boost15program_options11typed_valueIbcE6xparseERNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISB_EE]+0x17): undefined reference to boost::program_options::validate(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool*, int)' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionboost::program_options::typed_value, std::allocator >, std::allocator, std::allocator > > >, char>::name() const':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZNK5boost15program_options11typed_valueISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEcE4nameEv[_ZNK5boost15program_options11typed_valueISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEcE4nameEv]+0x1e): undefined reference to boost::program_options::arg[abi:cxx11]' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionboost::program_options::typed_value >, char>::nameabi:cxx11 const':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZNK5boost15program_options11typed_valueISt6vectorIfSaIfEEcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueISt6vectorIfSaIfEEcE4nameB5cxx11Ev]+0x1e): undefined reference to boost::program_options::arg[abi:cxx11]' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionboost::program_options::typed_value >, char>::nameabi:cxx11 const':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZNK5boost15program_options11typed_valueISt6vectorIjSaIjEEcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueISt6vectorIjSaIjEEcE4nameB5cxx11Ev]+0x1e): undefined reference to boost::program_options::arg[abi:cxx11]' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionboost::program_options::typed_value >, char>::nameabi:cxx11 const':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZNK5boost15program_options11typed_valueISt6vectorIdSaIdEEcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueISt6vectorIdSaIdEEcE4nameB5cxx11Ev]+0x1e): undefined reference to boost::program_options::arg[abi:cxx11]' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionboost::program_options::typed_value >, char>::nameabi:cxx11 const':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZNK5boost15program_options11typed_valueISt6vectorIiSaIiEEcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueISt6vectorIiSaIiEEcE4nameB5cxx11Ev]+0x1e): undefined reference to boost::program_options::arg[abi:cxx11]' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameEv[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameEv]+0x1e): more undefined references toboost::program_options::arg[abi:cxx11]' follow
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In function picongpu::SimulationStarter<picongpu::InitialiserController, picongpu::PluginController, picongpu::MySimulation>::parseConfigs(int, char**)': tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN8picongpu17SimulationStarterINS_21InitialiserControllerENS_16PluginControllerENS_12MySimulationEE12parseConfigsEiPPc[_ZN8picongpu17SimulationStarterINS_21InitialiserControllerENS_16PluginControllerENS_12MySimulationEE12parseConfigsEiPPc]+0x7a): undefined reference toboost::program_options::options_description::options_description(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int)'
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN8picongpu17SimulationStarterINS_21InitialiserControllerENS_16PluginControllerENS_12MySimulationEE12parseConfigsEiPPc[_ZN8picongpu17SimulationStarterINS_21InitialiserControllerENS_16PluginControllerENS_12MySimulationEE12parseConfigsEiPPc]+0x11b): undefined reference to boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)' tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN8picongpu17SimulationStarterINS_21InitialiserControllerENS_16PluginControllerENS_12MySimulationEE12parseConfigsEiPPc[_ZN8picongpu17SimulationStarterINS_21InitialiserControllerENS_16PluginControllerENS_12MySimulationEE12parseConfigsEiPPc]+0x1c7): undefined reference toboost::program_options::options_description::options_description(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int)'
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN8picongpu17SimulationStarterINS_21InitialiserControllerENS_16PluginControllerENS_12MySimulationEE12parseConfigsEiPPc[_ZN8picongpu17SimulationStarterINS_21InitialiserControllerENS_16PluginControllerENS_12MySimulationEE12parseConfigsEiPPc]+0x2a9): undefined reference to boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionvoid boost::re_detail_107000::raise_error > > >(boost::regex_traits_wrapper > > const&, boost::regex_constants::error_type)':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700011raise_errorINS_20regex_traits_wrapperINS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEEEEEvRKT_NS_15regex_constants10error_typeE[_ZN5boost16re_detail_10700011raise_errorINS_20regex_traits_wrapperINS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEEEEEvRKT_NS_15regex_constants10error_typeE]+0x88): undefined reference to boost::re_detail_107000::get_default_error_string(boost::regex_constants::error_type)' tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700011raise_errorINS_20regex_traits_wrapperINS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEEEEEvRKT_NS_15regex_constants10error_typeE[_ZN5boost16re_detail_10700011raise_errorINS_20regex_traits_wrapperINS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEEEEEvRKT_NS_15regex_constants10error_typeE]+0xb9): undefined reference toboost::re_detail_107000::raise_runtime_error(std::runtime_error const&)'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In function __gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > boost::re_detail_107000::re_is_set_member<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> >, unsigned int>(__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, __gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, boost::re_detail_107000::re_set_long<unsigned int> const*, boost::re_detail_107000::regex_data<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, bool)': tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700016re_is_set_memberIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_SH_SH_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb[_ZN5boost16re_detail_10700016re_is_set_memberIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_SH_SH_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb]+0x190): undefined reference toboost::re_detail_107000::cpp_regex_traits_implementation::transform_primaryabi:cxx11 const'
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700016re_is_set_memberIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_SH_SH_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb[_ZN5boost16re_detail_10700016re_is_set_memberIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_SH_SH_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb]+0x54a): undefined reference to boost::re_detail_107000::cpp_regex_traits_implementation<char>::transform[abi:cxx11](char const*, char const*) const' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionboost::re_detail_107000::perl_matcher<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > >, boost::regex_traits > >::extend_stack()':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE12extend_stackEv[_ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE12extend_stackEv]+0x18): undefined reference to boost::re_detail_107000::get_mem_block()' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionboost::re_detail_107000::perl_matcher<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > >, boost::regex_traits > >::match_prefix()':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE12match_prefixEv[_ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE12match_prefixEv]+0x110): undefined reference to boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > > const&)' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionvoid boost::program_options::validate, std::allocator >, char>(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, std::vector, std::allocator >, std::allocator, std::allocator > > >, int)':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost15program_options8validateINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEEvRNS_3anyERKSt6vectorINS3_IT0_S4_ISB_ESaISB_EEESaISE_EEPSA_IT_SaISJ_EEi[_ZN5boost15program_options8validateINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEEvRNS_3anyERKSt6vectorINS3_IT0_S4_ISB_ESaISB_EEESaISE_EEPSA_IT_SaISJ_EEi]+0xc1): undefined reference to boost::program_options::validate(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, int)' tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost15program_options8validateINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEEvRNS_3anyERKSt6vectorINS3_IT0_S4_ISB_ESaISB_EEESaISE_EEPSA_IT_SaISJ_EEi[_ZN5boost15program_options8validateINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEEvRNS_3anyERKSt6vectorINS3_IT0_S4_ISB_ESaISB_EEESaISE_EEPSA_IT_SaISJ_EEi]+0x26e): undefined reference toboost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string, std::allocator > const&)'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In function void boost::program_options::validate<unsigned int, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, unsigned int*, long)': tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost15program_options8validateIjcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateIjcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x166): undefined reference toboost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string, std::allocator > const&)'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In function void boost::program_options::validate<unsigned int, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::vector<unsigned int, std::allocator<unsigned int> >*, int)': tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost15program_options8validateIjcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPS4_IT_SaISG_EEi[_ZN5boost15program_options8validateIjcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPS4_IT_SaISG_EEi]+0x231): undefined reference toboost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string, std::allocator > const&)'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In function void boost::program_options::validate<int, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, int*, long)': tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost15program_options8validateIicEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateIicEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x16d): undefined reference toboost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string, std::allocator > const&)'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In function void boost::program_options::validate<unsigned short, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, unsigned short*, long)': tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost15program_options8validateItcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateItcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x1b8): undefined reference toboost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string, std::allocator > const&)'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost15program_options8validateIicEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPS4_IT_SaISG_EEi[_ZN5boost15program_options8validateIicEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPS4_IT_SaISG_EEi]+0x35b): more undefined references to boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' follow CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In functionboost::re_detail_107000::perl_matcher<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > >, boost::regex_traits > >::find_imp()':
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE8find_impEv[_ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE8find_impEv]+0xa): undefined reference to boost::re_detail_107000::get_mem_block()' tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE8find_impEv[_ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE8find_impEv]+0x12b): undefined reference toboost::re_detail_107000::verify_options(unsigned int, boost::regex_constants::_match_flags)'
tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE8find_impEv[_ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE8find_impEv]+0x172): undefined reference to boost::re_detail_107000::put_mem_block(void*)' tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE8find_impEv[_ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE8find_impEv]+0x2a6): undefined reference toboost::re_detail_107000::put_mem_block(void)'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In function bool boost::regex_search<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >(__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, __gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > >&, boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags, __gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >)': tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost12regex_searchIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISB_EEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEEEbT_SJ_RNS_13match_resultsISJ_T0_EERKNS_11basic_regexIT1_T2_EENS_15regex_constants12_match_flagsESJ_[_ZN5boost12regex_searchIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISB_EEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEEEbT_SJ_RNS_13match_resultsISJ_T0_EERKNS_11basic_regexIT1_T2_EENS_15regex_constants12_match_flagsESJ_]+0xfe): undefined reference toboost::re_detail_107000::perl_matcher<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > >, boost::regex_traits > >::construct_init(boost::basic_regex > > const&, boost::regex_constants::_match_flags)'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o: In function boost::re_detail_107000::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::match_match()': tmpxft_00023a0e_00000000-5_main.cudafe1.cpp:(.text._ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE11match_matchEv[_ZN5boost16re_detail_10700012perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaINS_9sub_matchISC_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE11match_matchEv]+0xaa): undefined reference toboost::match_results<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > > > const&)'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueISt6vectorIdSaIdEEcEE[_ZTVN5boost15program_options11typed_valueISt6vectorIdSaIdEEcEE]+0x38): undefined reference to boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x30): undefined reference toboost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x38): undefined reference to boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTCN5boost10wrapexceptINS_15program_options20invalid_option_valueEEE0_NS_16exception_detail10clone_implINS4_19error_info_injectorIS2_EEEE[_ZTVN5boost10wrapexceptINS_15program_options20invalid_option_valueEEE]+0x38): undefined reference toboost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost10wrapexceptINS_15program_options20invalid_option_valueEEE[_ZTVN5boost10wrapexceptINS_15program_options20invalid_option_valueEEE]+0x38): undefined reference to boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x30): undefined reference toboost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x38): more undefined references to boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' follow CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE[_ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE]+0x38): undefined reference toboost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEcEE[_ZTVN5boost15program_options11typed_valueISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEcEE]+0x38): undefined reference to boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueISt6vectorIfSaIfEEcEE[_ZTVN5boost15program_options11typed_valueISt6vectorIfSaIfEEcEE]+0x38): undefined reference toboost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueIjcEE[_ZTVN5boost15program_options11typed_valueIjcEE]+0x38): undefined reference to boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const' CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueISt6vectorIiSaIiEEcEE[_ZTVN5boost15program_options11typed_valueISt6vectorIiSaIiEEcEE]+0x38): undefined reference toboost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const'
CMakeFiles/picongpu.dir/picongpu_generated_main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueIbcEE[_ZTVN5boost15program_options11typed_valueIbcEE]+0x38): more undefined references to boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const' follow libpicongpu-hostonly.a(ArgsParser.cpp.o): In functionpicongpu::ArgsParser::parse(int, char)':
ArgsParser.cpp:(.text+0x4dd): undefined reference to boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)' ArgsParser.cpp:(.text+0x9e0): undefined reference toboost::program_options::abstract_variables_map::operator const'
libpicongpu-hostonly.a(ArgsParser.cpp.o): In function boost::program_options::basic_command_line_parser<char>::basic_command_line_parser(int, char const* const*)': ArgsParser.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x17d): undefined reference toboost::program_options::to_internal(std::__cxx11::basic_string, std::allocator > const&)'
ArgsParser.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x21b): undefined reference to boost::program_options::detail::cmdline::cmdline(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)' libpicongpu-hostonly.a(ArgsParser.cpp.o): In functionboost::program_options::basic_parsed_options boost::program_options::parse_command_line(int, char const const, boost::program_options::options_description const&, int, boost::function1, std::allocator >, std::__cxx11::basic_string, std::allocator > >, std::__cxx11::basic_string, std::allocator > const&>)':
ArgsParser.cpp:(.text._ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESJ_ERKSJ_EE[_ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESJ_ERKSJ_EE]+0xaf): undefined reference to `boost::program_options::detail::cmdline::set_additional_parser(boost::function1, std::allocator >, std::__cxx11::basic_string, std::allocator > >, std::__cxx11::basic_string, std::allocator > const&>)'
collect2: error: ld returned 1 exit status
make[2]: * [picongpu] Error 1
make[1]: [CMakeFiles/picongpu.dir/all] Error 2
make: * [all] Error 2

georgi-mania on 19 Aug 2020

Ah, you are right. I forgot the original error was at mpiInfo (although the error itself is unrelated to MPI). So my suggestion about ABI did not give any progress then.

sbastrakov on 19 Aug 2020

HI @sbastrakov ! Is there any update on this? Thanks!

georgi-mania on 7 Sep 2020

For me it looks like boost is not compiled for c++11.

psychocoderHPC on 7 Sep 2020

Still some ArgsParser errors when using boost with cxxstd=11. Final lines of the error message:

libpicongpu-hostonly.a(ArgsParser.cpp.o): In function boost::program_options::basic_parsed_options<char> boost::program_options::parse_command_line<char>(int, char const* const*, boost::program_options::options_description const&, int, boost::function1<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>)': ArgsParser.cpp:(.text._ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESJ_ERKSJ_EE[_ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESJ_ERKSJ_EE]+0xaf): undefined reference toboost::program_options::detail::cmdline::set_additional_parser(boost::function1, std::allocator >, std::__cxx11::basic_string, std::allocator > >, std::__cxx11::basic_string, std::allocator > const&>)'
collect2: error: ld returned 1 exit status

georgi-mania on 8 Sep 2020

mhh maybe somehow it is linking against a local boost version instead of the version compiled by spack. I think we saw it already in an other issue too. I try to link the issue tomorrow.

psychocoderHPC on 8 Sep 2020

@georgi-mania It looks like you spack environment is somehow "dirty". When I look to the report https://github.com/ComputationalRadiationPhysics/picongpu/issues/3326#issuecomment-675410310 there is a line that show that the compiler is linking against boost 1.73.0" but later in the outputboost 1.70.0` is used. Both libs are compiled with a different compile.

# include from boost 1.73.0
 -I/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/boost-1.73.0-iwuyztgxs5gjw2hg2b36ecpil5iub2ad/include

#....

/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/boost-1.70.0-pfudcdmjlzugewguf6o4t3cktnkqjp5g/include/boost/fusion/support/unused.hpp(25): warning: host annotation is ignored on a function("unused_type") that is explicitly defaulted on its first declaration

My suggestion would be to remove all spack boost package you not need, clean caches of spack https://spack.readthedocs.io/en/latest/command_index.html#spack-clean .

psychocoderHPC on 10 Sep 2020

Thank you for the suggestion @psychocoderHPC . [email protected] was installed as dependency when I tried to install picongpu with spack. I reinstalled boost 1.70.0 with cxxstd=11 and retried the build. Now I get many errors similar to the one below in libsplash:
/nfs/dust/atlas/user/maniageo/spack/opt/spack/linux-centos7-skylake_avx512/gcc-7.3.0/libsplash-1.7.0-5ru6s3bw2kzgosi7kvb7s6cbijxmwmrp/lib/libSplash.a(SerialDataCollector.cpp.o): In function splash::SerialDataCollector::setFileAccessParams(long&): /var/lib/condor/execute/dir_21976/maniageo/spack-stage/spack-stage-libsplash-1.7.0-5ru6s3bw2kzgosi7kvb7s6cbijxmwmrp/spack-src/src/SerialDataCollector.cpp:50: undefined reference to H5P_LST_FILE_ACCESS_ID_g

I think it would be best to wait for [email protected] spack package and retry to install a fresh copy then.
Thank you again for all your support!

georgi-mania on 10 Sep 2020

@georgi-mania spack recipe for PIConGPU 0.5.0 is now merged. Could you try if the error is gone with 0.5.0.

Do not forget to update your local repo you cloned from https://github.com/ComputationalRadiationPhysics/spack-repo.git else 0.5.0 will not be available.

Since you had problems in the last post to build the dependency libsplash it could help to clear your spack installation if you use spack only for PIConGPU.

psychocoderHPC on 16 Sep 2020

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