Dockstore: Document possible syntax error with WDL
See https://discuss.dockstore.org/t/getting-started-with-wdl/1544/2
and @bshifaw
鈹咺ssue is synchronized with this Jira Story
鈹咺ssue Type: Story
鈹咶ix Versions: Dockstore 1.6
鈹哠print: Seabright Sprint 5 Electric
鈹咺ssue Number: DOCK-252
denis-yuen
All 4 comments
Our current parser doesn't support v1.0. Need to update our parser https://github.com/ga4gh/dockstore/issues/2171
garyluu
on 4 Mar 2019
@garyluu before closing this, please update our docs somewhere appropriate (maybe the language support table) to indicate what version we do support
denis-yuen
on 4 Mar 2019
I am not a fan of the error message
methods indicate that this might be a WDL 1.0 file we skipped validation: will likely break import parsing and dag generation:
This seems like two messages concatenated together.
Maybe something like
Unknown methods were found, indicating that this may be a WDL 1.0 file. Currently Dockstore cannot parse WDL 1.0, so validation has been skipped. It is likely that the import processing and DAG generation will be broken.
agduncan94
on 26 Mar 2019
Confirmed that you get There is a syntax error or your WDL version is greater than draft-2. Please check the WDL file. as the error message in the workflow's description.
DockstoreAPI - 1.6.0-rc.0
DockstoreUI - 2.3.0-rc.1
NatalieEO
on 28 Mar 2019
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Most helpful comment
I am not a fan of the error message
This seems like two messages concatenated together.
Maybe something like