Dockstore: Workflow launch help message does not match code in explanation of parameters json, yaml

Created on 20 Dec 2018  Â·  3Comments  Â·  Source: dockstore/dockstore

Bug Report

Expected behaviour

wdl and nextflow currently only launch with json, while cwl can launch with either json, or yaml. The help message for dockstore workflow help should reflect this.

Actual behaviour

Help message states that '--json', '--yaml', '--tsv' are optional parameters when at least one is required to run workflow.
Also Source code shows that to launch a workflow only cwl has yaml support, but help message for dockstore workflow launch implies otherwise. Tsv parameter is correctly identified as cwl only.

Environment (Browser or OS and Dockstore version)

MacOS, Dockstore 1.5.1

┆Issue is synchronized with this Jira Bug
┆Fix Versions: Dockstore 1.9
┆Issue Number: DOCK-282
┆Sprint: Sprint 34 Isopods
┆Issue Type: Bug

bug cli review

Most helpful comment

If you use --local-entry, it does pass on the yaml

All 3 comments

CLI exception aside, we should check whether WDL workflows can be launched with YAML

If you use --local-entry, it does pass on the yaml

➤ Denis Yuen commented:

Looking good on current dockstore-cli develop

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