Use the FilesMaster 3.30.0-7de42f4 Flatpak with Yaru with no theming problems.
The lines in the window buttons and hamburger menus are too thick in both snaps and Flatpaks (see below for screenshots).
sudo apt install flatpakflatpak remote-add --from gnome-apps-nightly https://sdk.gnome.org/gnome-apps-nightly.flatpakrepoflatpak install gnome-apps-nightly org.gnome.NautilusMasterflatpak run org.gnome.NautilusMastersnap install gnome-clockssnap run gnome-clockssnap install gnome-characterssnap run gnome-characterssnap install mailspringsnap run mailspring/usr/bin/nautilus$ snap info communitheme
name: communitheme
summary: The next Ubuntu theme built by the community.
publisher: Didier Roche (didrocks)
license: unset
description: |
Yaru, formerly known as Communitheme, is the new Ubuntu theme built by the
community. Yaru will become the default Ubuntu theme in Ubuntu 18.10. This
package allows you to try out the theme on Ubuntu 18.04 LTS.
To try out the theme, install this package on Ubuntu 18.04 LTS, restart
your computer and select the "Ubuntu with communitheme snap" session from
the login screen.
More information is available at
https://community.ubuntu.com/t/faq-ubuntu-new-theme/1930.
snap-id: Yd6CISPIf6tEf3ZEJ0cqSoEg9rG2VkRi
tracking: edge
refresh-date: 6 days ago, at 18:54 BST
channels:
stable: 0.1 (1273) 17MB -
candidate: ↑
beta: ↑
edge: 0.1 (1275) 17MB -
installed: 0.1 (1275) 17MB -
$ snap version
snap 2.35.5
snapd 2.35.5
series 16
ubuntu 18.04
kernel 4.15.0-36-generic
$ snap info core
tracking: beta
refresh-date: today at 09:42 BST
installed: 16-2.35.5 (5742) 92MB core
Software that presents the issue:

stable)
stable)
Software that doesn't present the issue:
stable)

I believe this is related to #915 , Yaru flatpak version does not provide the icons. I am unsure how to handle this, there is nothing we can do in this repository to fix this issue, so it is probably the wrong place to open the ticket, however even in the correct repository (https://github.com/flathub/org.gtk.Gtk3theme.Yaru) I don't know if icon management is possible
The bug applies to the GNOME Clocks snap as well?
The bug applies to the GNOME Clocks snap as well?
Yup those are adwaita icons
Closing this as we can't fix this from our side. It's a flatpak thing sadly
Flatpak just passes in host icons. I guess Yaru doesn't install them into /usr/share/icons?
Flatpak say they can't see how this is a Flatpak issue @Feichtmeier, could you please explain to them how it is a Flatpak issue (assuming that you're right and it is)?
I set up a PopOS VM and see how flatpaks behave there, since they use their own themes and icons, too =)
@TingPing
on Ubuntu 18.10 the yaru icons are installed in /usr/share/icons
(no this is nautilus from the staging ppa, not the flatpak)

The bug doesn't seem to be reproducible (not even on my own system) so I have closed it.