Top scanpy issues

When I ran sce.pp.mnn_correct(), there was an IndexError

bug
tkisss picture tkisss·6 Jan 2020·5 Comments

Install Issue: AttributeError: module 'igraph' has no attribute 'VertexClustering'

bug upstream
SiyuSiyuYang picture SiyuSiyuYang·26 Dec 2019·2 Comments

Auto-generation of Study files for Single Cell Portal submission

question
sjfleming picture sjfleming·7 Dec 2019·3 Comments

Getting the error: "numba.errors.TypingError: Failed in nopython mode pipeline (step: nopython frontend)" when running sc.tl.umap with init_pos='paga'

bug
ndrubins picture ndrubins·6 Dec 2019·7 Comments

AttributeError: 'AnnData' object has no attribute 'obs_vector'

bug
MichaelPeibo picture MichaelPeibo·1 Dec 2019·6 Comments

How to merge sub-clusters or rename the categories with identical cluster names?

question
selifeski picture selifeski·18 Nov 2019·7 Comments

sc.pl.scatter for var

bug
coh-racng picture coh-racng·2 Aug 2019·8 Comments

mnn_correct() ValueError: not enough values to unpack (expected 3, got 1)

bug
Gpasquini picture Gpasquini·30 Jul 2019·11 Comments

sc.tl.rank_genes_groups to rank only specific genes of interest?

question
Olivia117 picture Olivia117·25 Jul 2019·4 Comments

sc.pl.heatmap cannot show different colors for more than 20 cell types

bug plots
jhu99 picture jhu99·21 Mar 2019·6 Comments
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