Top scanpy issues

Combat populates adata.X with NANs so sc.pp.highly_variable_genes function outputs error

bug
auesro picture auesro·19 Apr 2020·12 Comments

Filtering cells by barcodes?

maxnguyen46 picture maxnguyen46·4 Dec 2019·3 Comments

Jackstraw implementation in scanpy?

enhancement
prabhakaranm picture prabhakaranm·15 Oct 2019·14 Comments
👍2

It seems that igraph project changed its name

biubiu-1 picture biubiu-1·2 Sep 2019·9 Comments

Dotplot where sizes are proportional to p-value and the color to log2-fold change?

enhancement
falexwolf picture falexwolf·26 Mar 2019·21 Comments
👍1

Additional parameters in some functions - new functions

andrea-tango picture andrea-tango·4 Feb 2019·23 Comments
👍4

Calculate differential expression between user defined groups of clusters

aditisk picture aditisk·13 Dec 2018·20 Comments

Subsetting multiple indices/clusters

miketerkelsen picture miketerkelsen·3 Aug 2018·2 Comments

kNN graph and leiden clustering differences between scanpy and Seurat

question
mxposed picture mxposed·4 Dec 2020·6 Comments

scanpy.pp.pca fails on small datasets

bug
scottgigante picture scottgigante·14 Feb 2020·8 Comments
 Previous issues
Next issues