Top scanpy issues

scanpy conda installation error

bug
m21camby picture m21camby·13 Jan 2020·18 Comments

Read multiple 10X files

cartal picture cartal·21 Sep 2018·9 Comments

integrate with CCA and pyscenic

wangjiawen2013 picture wangjiawen2013·21 Sep 2018·16 Comments
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Issues with conda installation

bug
giovp picture giovp·2 Apr 2020·4 Comments

"invalid shape in fixed-type tuple" when saving adata after ranking genes

dylkot picture dylkot·11 Sep 2019·9 Comments

filter cells by a specific gene value

koalap-2018 picture koalap-2018·9 Apr 2019·3 Comments

Where can I find log-fold change in gene expression for the markers

DoruMP picture DoruMP·21 May 2018·10 Comments

Export expression matrix from h5ad

cartal picture cartal·13 Sep 2018·26 Comments

Imputation methods

wflynny picture wflynny·3 Jul 2018·6 Comments

Error in sc.tl.dendrogram: The truth value of a Index is ambiguous.

bug good first issue
letaylor picture letaylor·1 Jul 2020·8 Comments
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