Scout: Update case individuals with RNA-seq tracks

Created on 15 Mar 2021  路  2Comments  路  Source: Clinical-Genomics/scout

Update one or more individuals of a case from the command line, by adding another option to the scout update individualcommand:

image

enhancement Easy RNA-seq
Source
picture northwestwitch

Most helpful comment

I've created a simple splice junctions viewer to compare the files produced by @jemten in our pipeline and some files provided by igv.js. They look perfect! Our data is the track below:

image

picture northwestwitch on 24 Mar 2021
🎉3

All 2 comments

Checking on the igv.js wiki and cram/bam files are definitely NOT the format of choice for displaying splice junctions: https://github.com/igvteam/igv.js/wiki/Splice-Junctions

We probably need to generate the 2 files (bed and bigwig) required for the sashimi-like track

northwestwitch picture northwestwitch on 15 Mar 2021

I've created a simple splice junctions viewer to compare the files produced by @jemten in our pipeline and some files provided by igv.js. They look perfect! Our data is the track below:

image

northwestwitch picture northwestwitch on 24 Mar 2021
🎉3
Was this page helpful?
0 / 5 - 0 ratings

Related issues

4WGH picture 4WGH  路  3Comments
mhkc picture mhkc  路  3Comments
4WGH picture 4WGH  路  3Comments
andreaswallberg picture andreaswallberg  路  4Comments
hassanfa picture hassanfa  路  3Comments