I'm getting "one" redstone dust
I'm getting "two" redstone dust (item duplication)
no plugins
This server is running Paper version git-Paper-639 (MC: 1.13.2)
(Implementing API version 1.13.2-R0.1-SNAPSHOT)
"use-faster-eigencraft-redstone false" stop this bug
Can confirm on git-Paper-135 (MC: 1.14.4)

Only seems to happen when it's a powered redstone line of 2 wide, doesn't seem to occur when it's longer than 2 or when it's just 1 redstone dust. And it only seems to happen when you destroy the block on top of the power source.
Confirmed
Video:
https://cdn.hexedhero.com/u/gUrIZXN2eF.mp4
Confirmed in Paper 1.14.4 194 still a problem
Confirmed on Paper 1.14.4 #223
Still present in git-Paper-43 (1.15.1), but the redstone wire doesn't have to be exactly 2 long, it just needs to be at least 2 long and powered from the block below. Does not work with activator rails. Also works if you eg. use a piston to move the block
Confirmed to be an issue with eigencraft's logic