Hello, thanks for awesome plugin, but I found a problem:
my project's folder

after refresh with R becomes

How to fix this issue?
I'm figured out that nerdtree gets info about this directories from wildignore, but seems to be that NERDTreeRespectWildIgnore option doesn't work for me..
@milushov: Brilliant! NERDTree wasn't showing some files (sometimes was; sometimes was not) -- e.g. *.js files -- even after refreshing NERDTree using either of { r | R }.
Removing *.js from "set wildignore+=..." in my ~/.vimrc appeared to (immediately) solve this!
The inconsistency in how the NERDTree behaves in relation to the g:NERDTreeRespectWildIgnore setting is being addressed in pull request #716. This issue will be closed when that pull request is merged.
This issue was resolved by pull request #717.