Top minimap2 issues

GFF output

feature-request
iminkin picture iminkin·17 Jul 2019·2 Comments

[WARNING] For a multi-part index, no @SQ lines will be outputted. Please use --split-prefix.

question
dangchenyuan picture dangchenyuan·27 Dec 2018·5 Comments

minimap2 will not run with --MD option

bug
gbdias picture gbdias·25 Oct 2018·9 Comments

Using minimap2 in realtime

question
lcmmichielsen picture lcmmichielsen·19 Sep 2018·10 Comments

MapQ = 0

question
a-89 picture a-89·23 Aug 2018·7 Comments

Soft-clipping at contig ends

question
Adamtaranto picture Adamtaranto·10 Aug 2018·5 Comments

Clipping penalty [feature request]

question
sjackman picture sjackman·2 Feb 2018·3 Comments

Mapping rule

question
Zefeng-Wu picture Zefeng-Wu·7 Nov 2019·1 Comments

convert PAF to SAM

question
pterzian picture pterzian·10 Oct 2019·3 Comments

Align multiple illumina PE reads at once with minimap2

question
xbarvazx picture xbarvazx·27 Jun 2019·1 Comments
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