Huginn: bootstrap stderr | mv: bootstrap stderr | cannot create directory ‘/var/lib/mysql/mysql’ bootstrap stderr | : Permission denied bootstrap stderr |

Created on 23 Jan 2019 · 6Comments · Source: huginn/huginn
I keep getting the following error when trying to start the container:
bootstrap stderr | mv: bootstrap stderr | cannot create directory ‘/var/lib/mysql/mysql’ bootstrap stderr | : Permission denied bootstrap stderr | , bootstrap stderr | mv: bootstrap stderr | cannot create directory ‘/var/lib/mysql/performance_schema’2019-01-23 17:31:26,048 INFO exited: bootstrap (exit status 1; not expected)
How do I change to root user in the container to fix the "permission denied" error?
I'm running the latest version of docker/composer and huginn (& mysql 5.7)
Source
b0red
Most helpful comment

This is sadly a side effect of a change we made to the docker image. I am assuming you have a volume configured for the mysql data directroy? You can either chmod that to 777 or chown it to 1001:1001
https://github.com/huginn/huginn/issues/2254
https://github.com/huginn/huginn/pull/2112
dsander on 25 Jan 2019
👍3
All 6 comments

https://github.com/huginn/huginn/issues/2254
https://github.com/huginn/huginn/pull/2112
dsander on 25 Jan 2019
👍3
Hi, I still get the errors;
this is my .yaml for the mysql container:
`mysql: image: "mysql:5.7" container_name: mysql hostname: mysql restart: always volumes: - /etc/localtime:/etc/localtime:ro - ${USERDIR}/docker/mysql:/config - ${USERDIR}/docker/mysql:/var/lib/mysql environment: - MYSQL_ROOT_PASSWORD=xxxxx - MYSQL_DATABASE_GHOST=gh0st_db - MYSQL_USER_ROOT=xxxxxxx - MYSQL_DATABASE=huginn_db - MYSQL_USER=huginn - MYSQL_PASSWORD=huginn_passwrd - PUID=${PUID} - PGID=${PGID}`
folder permissions for ~/docker/mysql:
drwxrwxr-x+ 8 test test 4.0K Jan 31 17:14 mysql
folder permissions for ~/docker/huginn
drwxr-xr-x+ 3 root root 4.0K Jan 23 17:31 huginn
can't find any other place to chmod to 777. What am I missing?
b0red on 31 Jan 2019
Can you post the complete docker compose config? The error message you posted originally looks like it is coming from the Huginn container and not from mysql.
dsander on 1 Feb 2019
Sure, Here's my complete .yml file;
version: "3.6"
services:
  #############################################   Frontends               ############################
  #############################################   Traefik - Reverse proxy  ###########################
  traefik:
    hostname: traefik
    image: traefik:latest
    container_name: traefik
    restart: always
    domainname: ${DOMAINNAME} 
    command: --api --docker --docker.domain=${DOMAINNAME} --docker.watch --loglevel=DEBUG
    #command: --api --docker --docker.domain=docker.localhost --docker.watch --loglevel=DEBUG
    networks:
      - default
      - traefik_proxy
    ports:
      #- "80:80"
      #- "443:443"
      - "8008:8080"
    labels:
      - "traefik.enable=true"
      - "traefik.backend=traefik"
      - "traefik.port=8008"
      - "traefik.protocol=http"
      - "traefik.frontend.auth.basic=patrick:$$apr1$$GvZfZWBD$$elW3NQT0LACdrEp8PB2CT/"
        #- "traefik.frontend.rule=Host:${DOMAINNAME}; PathPrefixStrip: /traefik"
      - "traefik.frontend.rule=Host:traefik.${DOMAINNAME}"  
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
    volumes:
      - /var/run/docker.sock:/var/run/docker.sock:ro
      - ${USERDIR}/docker/traefik/acme/acme.json:/acme.json
      - ${USERDIR}/docker/compose/traefik.toml:/traefik.toml
  #Letsencrypt                                                    ------------------------ Letsencrypt
  letsencrypt:
    image:  linuxserver/letsencrypt
    container_name: le
    ports:
      - "447:443"
    networks:
      - default
      - traefik_proxy
    volumes:
      - ${USERDIR}/docker/letsencrypt/config:/config
    restart: always
    depends_on:
      - portainer
      - heimdall
      - organizr2
      - lazylibrarian
      - plex
      - tautulli
      - headphones
      - lidarr
      - couchpotato
      - radarr
      - sickrage
      - sonarr
      - airsonic
      - glances
      - ghost
      - transmission-vpn
      - sabnzbd
        #- hydra2
        #- nzbget
        #- jackett
        ##- duplicati
        ##- bazarr
        ##- homeassistant
        ##- filebrowser
        ##- ombi
        ##- elkarbackup
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
      - URL=${DOMAINNAME}
      - EMAIL=${EMAIL}
      - SUBDOMAINS=wildcard
      - VALIDATION=duckdns
      - DUCKDNSTOKEN=${DUCKTOKEN}
      - ONLY_SUBDOMAINS=false
      - DHLEVEL=4096
  ####################################   Docker related  ############################################
  #Portainer - WebUI for docker containers                          ------------------------ Portainer
  portainer:
    image: "portainer/portainer"
    hostname: portainer
    container_name: portainer
    restart: always
    command: -H unix:///var/run/docker.sock
    ports:
      - "9001:9000"
    networks:
      - default
      - traefik_proxy
    volumes:
      - /var/run/docker.sock:/var/run/docker.sock
      - ${USERDIR}/docker/portainer/data:/data
      - ${USERDIR}/docker/shared:/shared
    environment:
      - TZ=${TZ}
    labels:
      - "traefik.enable=false"
      - "traefik.backend=portainer"
      - "traefik.port=9000"
      - "traefik.frontend.rule=Host:portainer.${DOMAINNAME}"  
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
        #- "trafik.frontend.entryPoint=http,https"
  #Watchtower - Container update                                   ----------------------- Watchtower
  watchtower:
    container_name: watchtower
    restart: always
    image: "v2tec/watchtower"
    volumes:
      - /var/run/docker.sock:/var/run/docker.sock
      - /etc/localtime:/etc/localtime:ro
      - ${USERDIR}/docker/shared:/shared
    environment:
      - TZ=${TZ}
      - [email protected]
      - WATCHTOWER_NOTIFICATION_EMAIL_SERVER_PASSWORD=
      - WATCHTOWER_NOTIFICATION_EMAIL_SERVER_PORT=587
      - [email protected]
      - WATCHTOWER_NOTIFICATION_EMAIL_SERVER=smtp.gmail.com
      - [email protected]
      - WATCHTOWER_NOTIFICATIONS=email
  ####################################   Webfrontends     ###########################################
  #Organizr - Webui for all servers                                ------------------------- Organizr 
  organizr2:
    container_name: organizr2
    restart: always
    image: "organizrtools/organizr-v2"
    volumes:
      - ${USERDIR}/docker/organizr2:/config
      - ${USERDIR}/docker/backups:/backups
      - ${USERDIR}/docker/shared:/shared
      - ${USERDIR}/docker/letsencrypt/config/etc/letsencrypt:/le-ssl
    ports:
      - "8888:80"
    networks:
      - default
      - traefik_proxy
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
    labels:
      - "traefik.enable=true"
      - "traefik.backend=organizr2"
      - "traefik.port=80"
      - "traefik.frontend.rule=Host:organizr2.${DOMAINNAME}"  
      - "traefik.docker.network=traefik_proxy"
      - "trafik.frontend.entryPoint=http,https"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #Heimdall                                                       -------------------------- Heimdall
  heimdall:
    image: "linuxserver/heimdall"
    container_name: heimdall
    ports:
      - "81:80"
      - "444:443"
    networks:
      - default
      - traefik_proxy
    restart: unless-stopped
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    volumes:
      - ${USERDIR}/docker/heimdall:/config
      - ${USERDIR}/docker/letsencrypt/config/etc/letsencrypt:/le-ssl
    labels:
      - "traefik.enable=true"
      - "traefik.backend=heimdall"
      - "traefik.frontend.rule=Host:heimdall.${DOMAINNAME}"  
      - "traefik.port=80"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #Glances  System monitor                                         --------------------------- Glances
  glances:
    image: "docker.io/nicolargo/glances"
    hostname: glances
    container_name: glances
    restart: always
    #command: -H unix:///var/run/docker.sock
    ports:
      - "61208-61209:61208-61209"
    networks:
      - default
      - traefik_proxy
    volumes:
      - /var/run/docker.sock:/var/run/docker.sock:ro 
        #- ${USERDIR}/docker/glances/data:/data
      - ${USERDIR}/docker/glances/config:/config
        #- ${USERDIR}/docker/shared:/shared
    environment:
      - GLANCES_OPT=-w
      - PID=host
      - TZ=${TZ}
    labels:
      - "traefik.enable=false"
      - "traefik.backend=glances"
      - "traefik.frontend.rule=Host:glances.${DOMAINNAME}"  
      - "traefik.port=61208-61209"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  ####################################    DynDNS related  ########################################### 
  #Dyndnsclient                                                   -------------------------- DDClient
  ddclient:
    image: "linuxserver/ddclient"
    hostname: ddclient
    container_name: ddclient
    restart: always
    volumes:
      - ${USERDIR}/docker/ddclient:/config
    environment:    
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
  #Dyndnsclient                                                   --------------------------- DuckDNS
  duckdns:
    image: "linuxserver/duckdns"
    hostname: duckdns
    container_name: duckdns
    volumes:
      - ${USERDIR}/duckdns/config:/config
    environment:  
      - TZ=${TZ}
        #- SUBDOMAINS=subdomain1,subdomain2
      - SUBDOMAINS=dellubuntu.duckdns.org
      - TOKEN=c3b277b7-5503-4544-b681-2bd5b529e332
        # mem_limit: 4096m
    restart: unless-stopped 
  ######################################### Backup  #################################################
  #Duplicati . Backup                                             ------------------------- Duplicati
  #duplicati:
  # image: "linuxserver/duplicati"
  # container_name: duplicati
  # restart: always
  # ports:
  #   - "8200:8200"
  # networks:
  #   - default
  #   - traefik_proxy
  # volumes:
  #   - ${USERDIR}/docker/duplicati:/config
  #   - ${USERDIR}/docker/backups:/backups
  #   - ${USERDIR}/docker/shared:/shared
  #   - ${USERDIR}/docker:/source
  # environment:
  #   - PUID=${PUID}
  #   - PGID=${PGID}
  #   - TZ=${TZ}
  # labels:
  #   - "traefik.enable=true"
  #   - "traefik.backend=duplicati"
  #     #- "traefik.frontend.rule=Host:duplicati.${DOMAINNAME}"  
  #   - "traefik.frontend.rule=Host:${DOMAINNAME}; PathPrefixStrip: /duplicati"
  #   - "traefik.port=8200"
  #   - "traefik.docker.network=traefik_proxy"
  #     #- "traefik.frontend.headers.sslredirect=true"
  #     #- "traefik.frontend.headers.stsseconds=315360000"
  #     #- "traefik.frontend.headers.browserxssfilter=true"
  #     #- "traefik.frontend.headers.contenttypenosniff=true"
  #     #- "traefik.frontend.headers.forcestsheader=true"
  #     #- "traefik.frontend.headers.sslhost=example.com"
  #     #- "traefik.frontend.headers.stsincludesubdomains=true"
  #     #- "traefik.frontend.headers.stspreload=true"
  #     #- "traefik.frontend.headers.framedeny=true"
  #####################################   Organisers    ##############################################
  #####################################   Music         ##############################################
  #Headphones - Music downloader                                      --------------------- Headphones
  headphones:
    container_name: headphones
    restart: always
    image: "linuxserver/headphones"
    volumes:
      - ${USERDIR}/docker/headphones/config:/config
      - ${USERDIR}/docker/backups:/backups
      - ${USERDIR}/docker/headphones/data:/data
        #- ${USERDIR}/docker/headphones/downloads:/downloads
      - /media/all/Downloads/complete/music:/downloads
      - /media/Music:/music
      - ${USERDIR}/docker/letsencrypt/config/etc/letsencrypt:/le-ssl
    ports:
      - "8181:8281"
    networks:
      - traefik_proxy
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    labels:
      - "traefik.enable=true"
      - "traefik.backend=headphones"
      - "traefik.frontend.rule=Host:headphones.${DOMAINNAME}"  
      - "traefik.port=8281"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #LIDARR - Music Download and Management                           -------------------------- Lidarr 
  lidarr:
    image: "linuxserver/lidarr"
    hostname: lidarr
    container_name: lidarr
    volumes:
      - ${USERDIR}/docker/lidarr:/config
      - ${USERDIR}/docker/shared:/shared
      - ${USERDIR}/docker/backups:/backups
      - /media/all/Downloads/complete/music:/downloads
      - /media/Music:/music
        #- ${USERDIR}/Downloads:/downloads
        #- ${USERDIR}/media/music:/music
    ports:
      - "8686:8686"
    networks:
      - traefik_proxy
    restart: always
    environment:
      - "/etc/localtime:/etc/localtime:ro"
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    labels:
      - "traefik.enable=true"
      - "traefik.backend=lidarr"
      - "traefik.frontend.rule=Host:lidarr.${DOMAINNAME}"  
      - "traefik.port=8686"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #Airsonic - Mediastreamer (Music)                               ----------------------------- Airsonic
  airsonic:
    container_name: airsonic
    restart: always
    image: "linuxserver/airsonic"
    volumes:
      - ${USERDIR}/docker/emby/config:/config
      - ${USERDIR}/docker/shared:/shared
      - /media/all/Music:/music
        #- /media/all/playlists:/playlists
    ports:
      - "4040:4040"
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    networks: 
      - default
      - traefik_proxy
    labels:
      - "traefik.enable=true"
      - "traefik.backend=airsonic"
      - "traefik.frontend.rule=Host:tautulli.${DOMAINNAME}"  
      - "traefik.port=4040"
      - "traefik.docker.network=traefik_proxy" 
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #Beets - Music library manager                                     --------------------------- Beets
  beets:
    container_name: beets
    restart: always
    image: "linuxserver/beets"
    ports:
      - "8337:8337"
    volumes:
      - ${USERDIR}/docker/beets/config:/config
      - /media/all/Downloads/complete/music:/downloads
      - /media/Music:/music
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    labels:
      - "traefik.enable=false"
      -  "traefk.backend=beets"
      - "traefik.frontend.rule=Host:beets.${DOMAINNAME}"
      - "traefik.port=8337"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #####################################   eBooks         #############################################
  #Lazylibrarian - organize ebooks                                  -------------------- Lazylibrarian
  lazylibrarian:
    container_name: lazylibrarian
    restart: always
    image: "linuxserver/lazylibrarian"
    volumes:
      - ${USERDIR}/docker/lazylibrarian/config:/config
      - ${USERDIR}/docker/lazylibrarian/logs:/logs
      - ${USERDIR}/docker/lazylibrarian/cache:/cache
      - ${USERDIR}/docker/lazylibrarian/shared:/shared
      - ${USERDIR}/docker/backups:/backups
      - /media/Downloads/complete/epub:/downloads
      - /media/all/ePubs:/books
    ports:
      - "5298:5299"
    networks:
      - traefik_proxy
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    labels:
      - "traefik.enable=true"
      - "traefik.backend=lazylibrarian"
      - "traefik.frontend.rule=Host:lazylibrarian.${DOMAINNAME}"  
      - "traefik.port=5299"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #############################    PERSONAL VIDEO RECORDERS         ##################################
  #Couchpotato - Movieorganizer and downloader                      ---------------------- CouchPotato
  couchpotato:
    image: "linuxserver/couchpotato"
    hostname: couchpotato
    container_name: couchpotato
    volumes:
      - ${USERDIR}/docker/couchpotato:/config
      - ${USERDIR}/docker/shared:/shared
      - ${USERDIR}/docker/backups:/backups
      - /media/all/Downloads/complete/movies:/downloads
      - /media/all:/media/movies
    ports:
      - "5050:5050"
    networks:
      - traefik_proxy
    restart: always
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
      - UMASK_SET=022
    labels:
      - "traefik.enable=true"
      - "traefik.backend=couchpotato"
      - "traefik.frontend.rule=Host:couchpotato.${DOMAINNAME}"  
      - "traefik.port=5050"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  # Radarr - Alternative Moviemanager/ downloader (Alternative)     --------------------------- Radarr
  radarr:
    image: "linuxserver/radarr"
    hostname: radarr
    container_name: radarr
    volumes:
      - ${USERDIR}/docker/radarr:/config
      - ${USERDIR}/docker/radarr:/shared
      - ${USERDIR}/docker/backups:/backups
      - /media/all/Downloads/complete/movies:/downloads
      - /media/all:/media/movies
      - /etc/localtime:/etc/localtime:ro
    ports:
      - "7878:7878"
    networks:
      - traefik_proxy
    restart: always
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
      - UMASK_SET=022
    labels:
      - "traefik.enable=true"
      - "traefik.backend=radarr"
      - "traefik.frontend.rule=Host:radarr.${DOMAINNAME}"  
      - "traefik.port=7878"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #############################     TV shows        ##################################################
  # SickRage – TV Show Download and Management (Alternative)        ------------------------- SickRage
  sickrage:
    image: "linuxserver/sickrage"
    hostname: sickrage
    container_name: "sickrage"
    volumes:
      #- ${USERDIR}/Downloads/completed:/downloads
      #- ${USERDIR}/media/tvshows:/tv
      - ${USERDIR}/docker/sickrage:/config
      - ${USERDIR}/docker/shared:/shared
      - ${USERDIR}/docker/backups:/backups
      - /media/all/Downloads/complete/tv:/downloads
      - /media/all:/media/all
      - /media/tv1:/media/tv1
      - /media/tv2:/media/tv2
    ports:
      - "8081:8081"
    networks:
      - traefik_proxy
    restart: always
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    labels:
      - "traefik.enable=true"
      - "traefik.backend=sickrage"
      - "traefik.frontend.rule=Host:sickrage.${DOMAINNAME}"  
      - "traefik.port=8081"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #Sonarr - Alternative tv-shows downloader/manager                 --------------------------- Sonarr
  sonarr:
    image: "linuxserver/sonarr"
    hostname: sonarr
    container_name: sonarr
    ports:
      - "8989:8989"
    networks:
      - traefik_proxy
    volumes:
      - /etc/localtime:/etc/localtime:ro
      - ${USERDIR}/docker/sonarr:/config
      - ${USERDIR}/docker/backups:/backups
      - /media/all/Downloads/complete/tv:/downloads
      - /media/all:/media/all
      - /media/tv1:/media/tv1
      - /media/tv2:/media/tv2
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}"
    labels:
      - "traefik.enable=true"
      - "traefik.backend=sonarr"
      - "traefik.frontend.rule=Host:sonarr.${DOMAINNAME}"  
      - "traefik.port=8989"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #####################################   Plex Media Server     ######################################
  #Plex MS                                                          -------------------------- Plex MS
  plex:
    image: "plexinc/pms-docker:latest"
    container_name: "plexms"
    restart: always
    #net: host
    volumes:
      - ${USERDIR}/docker/plex/config:/config
      - ${USERDIR}/docker/shared:/shared
      - ${USERDIR}/docker/plex/plextemp:/transcode:rw
      - ${USERDIR}/docker/backups:/backups
      - /media/all/:/media/film
        # - /media/all/!Film - 480p:/media/film 
        #- /media/all/!Film - 720p:/media/film
        #- /media/all/!Film - Barn - Disney:/media/film
        #- /media/all/!Film - Barn:/media/film
      - /media/tv1:/media/tv1
      - /media/tv2:/media/tv2
      - /media/all/Music:/media/music
    ports:
      - "32400:32400"
      - "3005:3005/tcp"
      - "8324:8324/tcp"
      - "32469:32469/tcp"
      - "1900:1900/udp"
      - "32410:32410/udp"
      - "32412:32412/udp"
      - "32413:32413/udp"
      - "32414:32414/udp"
    networks:
      - default
      - traefik_proxy
    environment:
      #- NET=host
      - PLEX_UID=${PUID}
      - PGID=${PGID}
      - VERSION=latest
    labels:
      - "traefik.enable=true"
      - "traefik.backend=plexms"
      - "traefik.frontend.rule=Host:plexms.${DOMAINNAME}"  
      - "traefik.port=32400"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  ################################  MEDIA SERVER APPS   ##############################################
  ## Tautulli                                                     --------------------------- Tautulli
  tautulli:
    container_name: tautulli
    restart: always
    image: "linuxserver/tautulli"
    volumes:
      - ${USERDIR}/docker/tautulli/config:/config
      - ${USERDIR}/docker/plex/config/Library/"Application Support"/"Plex Media Server"/Logs:/logs
      - ${USERDIR}/docker/tautulli/cache:/cache
      - ${USERDIR}/docker/backups:/backups
      - ${USERDIR}/docker/shared:/shared
    ports:
      - "8383:8181"
    networks:
      - traefik_proxy
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ} 
    labels:
      - "traefik.enable=true"
      - "traefik.backend=tautulli"
      - "traefik.frontend.rule=Host:tautulli.${DOMAINNAME}"  
      - "traefik.port=8181"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #####################################  Downloaders      ############################################
  #Transmission + VPN                                           --------------------- Transmission VPN
  transmission-vpn:
    container_name: transmission-vpn
    image: haugene/transmission-openvpn
    cap_add:
      - NET_ADMIN
    devices:
      - /dev/net/tun
    restart: always
    ports:
      - "9091:9091"
      - "51414:51414"
    networks:
      - traefik_proxy
    dns:
      - 1.1.1.1
      - 1.0.0.1
    volumes:
      - /etc/localtime:/etc/localtime:ro
      - ${USERDIR}/docker/transmission-vpn:/data
      - ${USERDIR}/docker/transmission-vpn:/config
      - ${USERDIR}/docker/shared:/shared
      - /media/all/Downloads/watched:/data/watched
      - /media/all/Downloads/complete:/data/complete
      - /media/all/Downloads/incomplete:/data/incomplete
    environment:
      - TRANSMISSION_SCRAPE_PAUSED_TORRENTS_ENABLED=false
      - TRANSMISSION_INCOMPLETE_DIR=/data/incomplete
      - TRANSMISSION_INCOMPLETE_DIR_ENABLED=true
      - TRANSMISSION_WATCH_DIR=/data/watched
      - TRANSMISSION_WATCH_DIR_ENABLED=true
      - TRANSMISSION_DOWNLOAD_DIR=/data/complete
      - OPENVPN_PROVIDER=ANONINE
      - OPENVPN_USERNAME=mrakita
      - OPENVPN_PASSWORD=
      - OPENVPN_CONFIG="se-ovpn.anonine.net" 
      - OPENVPN_OPTS=--inactive 3600 --ping 10 --ping-exit 60
      - LOCAL_NETWORK=192.168.1.0/24
      - TRANSMISSION_RPC_AUTHENTICATION_REQUIRED=true
      - TRANSMISSION_RPC_HOST_WHITELIST="127.0.0.1,192.168.*.*,192.168.1.0/24"
      - TRANSMISSION_RPC_PASSWORD=
      - TRANSMISSION_RPC_USERNAME=transmission
      - TRANSMISSION_UMASK=002
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
      - TRANSMISSION_BLOCKLIST_URL=http://john.bitsurge.net/public/biglist.p2p.gz
      - TRANSMISSION_DOWNLOAD_QUE_SIZE=20
    labels:
      - "traefik.enable=false"
      - "traefik.backend=transmission-vpn"
      - "traefik.frontend.rule=Host:transmission-vpn.${DOMAINNAME}"  
      - "traefik.port=9091"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #NZBGet – Usenet (NZB) Downloader (Alternative)                   --------------------------- NZBget
  nzbget:
    image: "linuxserver/nzbget"
    container_name: nzbget
    volumes:
      - ${USERDIR}/docker/sabnzbd:/config
      - ${USERDIR}/docker/shared:/shared
      - /media/all/Downloads/complete:/downloads
      - /media/all/Downloads/incomplete:/incomplete-downloads
      - /media/all/Downloads/watched:/watched
    ports:
      - "6789:6789"
    networks:
      - traefik_proxy
    restart: always
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    labels:
      - "traefik.enable=false"
      - "traefik.backend=nzbget"
      - "traefik.frontend.rule=Host:nzbget.${DOMAINNAME}"  
      - "traefik.port=6789"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  # SABnzbd – Usenet (NZB) Downloader                             ---------------------------- SABnzbd
  sabnzbd:
    image: "linuxserver/sabnzbd"
    hostname: sabnzbd
    container_name: "sabnzbd"
    volumes:
    # - ${USERDIR}/Downloads/completed:/downloads
    # - ${USerdIR}/Downloads/incomplete:/incomplete-downloads
      - ${USERDIR}/docker/sabnzbd:/config      
      - ${USERDIR}/docker/shared:/shared
      - /media/all/Downloads/complete:/downloads/complete
      - /media/all/Downloads/incomplete:/downlods/incomplete
      - /media/all/Downloads/watched:/downloads/watched
    ports:
      - "8080:8080"
    networks:
      - traefik_proxy
    restart: always
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    labels:
      - "traefik.enable=false"
      - "traefik.backend=sabnzbd"
      - "traefik.frontend.rule=Host:sabnzbd.${DOMAINNAME}"  
      - "traefik.port=8080"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  ######### SEARCHERS ##########
  # Hydra2                                                           -------------------------- Hydra2
  hydra2:
    image: "linuxserver/hydra2"
    container_name: "hydra2"
    volumes:
      - ${USERDIR}/docker/hydra:/config
      - ${USERDIR}/docker/shared:/shared
      - /media/all/Downloads/complete:/downloads
    ports:
      - "5076:5076"
    networks:
      - traefik_proxy
    restart: always
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ} 
    labels:
      - "traefik.enable=false"
      - "traefik.backend=hydra2"
      - "traefik.frontend.rule=Host:hydra2.${DOMAINNAME}"  
      - "traefik.port=5076"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #Jackett                                                          -------------------------- Jackett
  jackett:
    image: "linuxserver/jackett"
    container_name: "jackett"
    volumes:
      - ${USERDIR}/docker/jackett:/config
      - ${USERDIR}/docker/shared:/shared
      - /media/all/Downloads/complete:/downloads
    ports:
      - "9117:9117"
    networks:
      - traefik_proxy
    restart: always
    environment:
      - "/etc/localtime:/etc/localtime:ro"
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    labels:
      - "traefik.enable=false"
      - "traefik.backend=jackett"
      - "traefik.frontend.rule=Host:jackett.${DOMAINNAME}"  
      - "traefik.port=9117"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #####################################  Misc stuff        ############################################
  #MySQL  - databaseserver                                          ---------------------------- -MySQL
  mysql:
    image: "mysql:5.7"
    container_name: mysql
    hostname: mysql
    restart: always
    volumes:
      - /etc/localtime:/etc/localtime:ro
      - ${USERDIR}/docker/mysql:/config
      - ${USERDIR}/docker/mysql:/var/lib/mysql
    environment:
      - MYSQL_ROOT_PASSWORD=
      - MYSQL_DATABASE_GHOST=gh0st_db
      - MYSQL_USER_ROOT=
      - MYSQL_DATABASE=huginn_db
      - MYSQL_USER=huginn
      - MYSQL_PASSWORD=
      - PUID=${PUID}
      - PGID=${PGID}
    networks:
      - default
  #ghost - alternative cms                                         ------------------------------- Ghost
  ghost:
    image: ghost:latest
    container_name: ghost
    hostname: ghost
    restart: unless-stopped
    ports:
      - "85:2368"
    volumes:
      - ${USERDIR}/docker/ghost:/ghost
    environment:
      - database__connection__user=
      - database__connection__password=
      - database__connection__database=gh0st_db
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    depends_on: 
      - mysql
    command: ["node", "current/index.js"]
    networks:
      - traefik_proxy 
    labels:
      - "traefik.enable=false"
      - "traefik.backend=ghost"
      - "traefik.frontend.rule=Host:ghost.${DOMAINNAME}"  
      - "traefik.port=2368"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #Nextcloud - fileaccess everywhere                              --------------------------- Nextcloud
  nextcloud:
    image: linuxserver/nextcloud
    container_name: nextcloud
    hostname: nextcloud
    restart: unless-stopped
    ports: 
      - "449:443"
    volumes:
      - ${USERDIR}/docker/nextcloud/config:/config
      - ${USERDIR}/docker/nextcloud/data:/data
    environment:
      - PUID=${PUID}
      - PGID=${PGID}
      - TZ=${TZ}
    networks:
      - default
      - traefik_proxy
    labels:
      - "traefik.enable=true"
      - "traefik.backend=nextcloud"
      - "traefik.frontend.rule=Host:ghost.${DOMAINNAME}"  
      - "traefik.port=443"
      - "traefik.docker.network=traefik_proxy"
      - "traefik.frontend.headers.SSLRedirect=true"
      - "traefik.frontend.headers.contentTypeNosniff=true"
      - "traefik.frontend.headers.forceSTSHeader=true"
      - "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      - "traefik.frontend.headers.STSIncludeSubdomains=false"
      - "traefik.frontend.headers.STSPreload=true"
      - "traefik.frontend.headers.frameDeny=true"
  #Huginn - dataminer                                           --------------------------------- Huginn
  huginn:
    image: "huginn/huginn:latest"
    container_name: huginn
    environment:
      - HUGINN_DATABASE=huginn_db
      - HUGINN_DATABASE_USERNAME=
      - HUGINN_DATABASE_PASSWORD=
      - DO_NOT_SEED=true
    volumes:
      - /etc/localtime:/etc/localtime:ro
      - ${USERDIR}/docker/huginn/config:/var/lib/mysql
    restart: unless-stopped
    ports:
      - "3000:3000"
    depends_on:
      - mysql
    links:
      - mysql
    networks:
      - default
      - traefik_proxy
    labels:
      - "traefik.enable=true"
      - "traefik.backend=huginn"
      - "traefik.frontend.rule=Host:huginn.${DOMAINNAME}"
      - "traefik.port=3000"
  #Guacamole - clientless RDP                                      -------------------------- Guacamole
  #guacamole:
    #image: guacamole/guacamole
    #container_name: guacamole
    #hostname: guacamole
    #restart: unless-stopped
    #ports:
      #- "8585:8080"
    #volumes:
      #- ${USERDIR}/docker/guacamole/config:/config
    #depends_on:
      #- mysql
      #- guacd
    #environment:
      #- MYSQL_PASSWORD=
      #- MYSQL_DATABASE=guacamole_db
      #- MYSQL_USER=
      #- GUACD_HOSTNAME=guacd
    #networks:
      #- traefik_proxy
    #links:
      #- guacd
    #labels:
      #- "traefik.enable=true"
      #- "traefik.backend=guacamole"
      #- "traefik.frontend.rule=Host:guacamole.${DOMAINNAME}"  
      #- "traefik.port=8080"
      #- "traefik.docker.network=traefik_proxy"
      #- "traefik.frontend.headers.SSLRedirect=true"
      #- "traefik.frontend.headers.contentTypeNosniff=true"
      #- "traefik.frontend.headers.forceSTSHeader=true"
      #- "traefik.frontend.headers.SSLHost=dellubuntu.duckdns.org"
      #- "traefik.frontend.headers.STSIncludeSubdomains=false"
      #- "traefik.frontend.headers.STSPreload=true"
      #- "traefik.frontend.headers.frameDeny=true"
  #guacd:
    #image: guacamole/guacd
    #container_name: guacd
    #hostname: guacd
    #volumes:
      #- ${USERDIR}/docker/guacd/config:/config
    #depends_on: 
      #- mysql
    #networks:
      #- traefik_proxy
  ##Pi-Hole - Adblocker                                            ---------------------------- Pi-Hole
  #pihole:
  #  image: "diginc/pi-hole"
  #  container_name: pihole
  #  hostname: pihole
  #  restart: unless-stopped
  #  ports:
  #    - "55:53/tcp"
  #    - "55:53/udp"
  #    - "68:67/udp"
  #    - "86:80/tcp"
  #    - "448:443/tcp"
  # environment:
  #    - ServerIP=${SERVER_IP}
  #    - PUID=${PUID}
  #    - PGID=${PGID}
  #    - TZ=${TZ}
  #    - WEBPASSWORD=
  #    - DNS1=${DNS1}
  #    - DNS2=${DNS2}
  #    - VIRTUAL_HOST=${SERVER_IP}:86
  #  dns: 
  #    - 127.0.0.1
  #    - 1.1.1.1
  #  extra_hosts: 
  #    - "dellubuntu.duckdns.org:${HOST_IP}"
  #  volumes:
  #    - ${USERDIR}/docker/pihole/:/config/
  #    - ${USERDIR}/docker/pihole/:/etc/pihole/
  #    - ${USERDIR}/docker/dnsmasq.d/:/etc/dnsmasq.d/
  #    - ${USERDIR}/docker/pihole/pihole.log:/var/log/pihole.log
  #  networks:
  #    - default
  #    - traefik_proxy
##############################        Networks - for traefik              ################################
networks:
  traefik_proxy:
    external:
      name: traefik_proxy
  default:
    driver: bridge
b0red on 1 Feb 2019
That is an impressive list of services 😄
With the configuration you are using the mysql service inside the Huginn container is using ${USERDIR}/docker/huginn/config as the directory on the host to store the mysql database (it does not connect to the mysql container). Did you change the permission of that directory?
dsander on 2 Feb 2019
chmod +777 mysql-volume solved it for me, thank you! Should be part of the docker documentation.