Godot: Input actions don't work after exporting project

[N8n5h]

Godot version:
v3.2.dev.custom_build.40acc3e

OS/device including version:
Ubuntu 18.04.2 LTS

Issue description:
Input's actions seems not to be working after exporting this minimal project to x11_x86_64 and Windows_x86.
The check:

if Input.is_action_pressed("test"):

only reports true when running the project from the editor, but after exporting it doesn't work anymore.

Notes:

• The editor and the export templates were compiled from the same commit.
• I could reproduce the issue in Ubuntu 18.04.2 LTS with the x11_64 export and in Wine and Windows 7 64 Native (no VM) with the Windows x86 export.
• I tested both debug and release in each version

[Calinou]

Are the editor and export templates built from the exact same commit?

[N8n5h]

Are the editor and export templates built from the exact same commit?

Yes, they were built from the exact same commit.

[N8n5h]

I tested a bit more and added the line test_label.text = str(InputMap.get_action_list("test")).
Running in editor outputs: " [[InputEventKey:43],[InputEventMouseButton:44]] "
but after compiling (I tested release in linux only) it outputs: "[]".
It may be unbinding the keys to the action for some reason?