Top dada2 issues

Segmentation fault in learnErrors using bioconda dada2 1.10

bug
apcamargo picture apcamargo·20 Feb 2019·74 Comments

What to call a dada2 sequence?

jeffkimbrel picture jeffkimbrel·25 Mar 2016·52 Comments

Multithread option for collapseNoMismatch()

Priority enhancement
masumistadler picture masumistadler·28 Nov 2018·18 Comments

intuition for appropriate filtering parameters

enhancement
wdwvt1 picture wdwvt1·28 Apr 2017·33 Comments

phylogenetic tree construction in DADA2?

FabianRoger picture FabianRoger·29 Jun 2016·35 Comments

A DADA2 logo

benjjneb picture benjjneb·18 Oct 2017·17 Comments
🎉1

No singletons left in dataset after processing with dada2.

lfaller picture lfaller·23 Mar 2017·1 Comments
👍2

Silva 132 vs 138 for identifying cyanobacterial ASVs

pdcountway picture pdcountway·2 Mar 2020·21 Comments

In dada2 default data (i.e. pooled = FALSE) richness correlates with total amplicons but rarefaction curves plateau early because the data usually contains almost no singletons. How to correctly correct for this effect?

TBrach picture TBrach·21 Aug 2017·7 Comments

Consequences of using dada2 on NovaSeq data

Priority enhancement
hhollandmoritz picture hhollandmoritz·14 Jun 2019·32 Comments
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