Shiny: error installing shiny (httpuv)
Hi,
I tried many ways to install the package shiny in R on my RasPi but it always ends up with "installation had non-zero exit status.
The error I get is the following:
install.packages("httpuv")
Installing package into ‘/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3’
(as ‘lib’ is unspecified)
trying URL 'https://ftp.gwdg.de/pub/misc/cran/src/contrib/httpuv_1.4.3.tar.gz'
Content type 'application/octet-stream' length 1673359 bytes (1.6 MB)
==================================================
downloaded 1.6 MB
* installing *source* package ‘httpuv’ ...
** package ‘httpuv’ successfully unpacked and MD5 sums checked
** libs
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports-legacy.cpp -o RcppExports-legacy.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callback.cpp -o callback.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbackqueue.cpp -o callbackqueue.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-unix.cpp -o filedatasource-unix.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-win.cpp -o filedatasource-win.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http.cpp -o http.o
In file included from webapplication.h:7:0,
from http.h:7,
from http.cpp:1:
websockets.h:196:47: error: ‘>>’ should be ‘> >’ within a nested template argument list
void read(boost::shared_ptr<std::vector<char>> buf);
^
In file included from http.h:7:0,
from http.cpp:1:
webapplication.h:19:61: error: ‘>>’ should be ‘> >’ within a nested template argument list
boost::shared_ptr<std::vector<char>> data,
^
webapplication.h:27:62: error: ‘>>’ should be ‘> >’ within a nested template argument list
boost::shared_ptr<std::vector<char>> data,
^
webapplication.h:61:61: error: ‘>>’ should be ‘> >’ within a nested template argument list
boost::shared_ptr<std::vector<char>> data,
^
webapplication.h:69:62: error: ‘>>’ should be ‘> >’ within a nested template argument list
boost::shared_ptr<std::vector<char>> data,
^
In file included from http.cpp:1:0:
http.h:73:80: error: ‘>>’ should be ‘> >’ within a nested template argument list
auto_deleter_background<boost::shared_ptr<WebSocketConnection>>,
^
http.h: In function ‘Rcpp::XPtr<boost::shared_ptr<WebSocketConnection>, Rcpp::PreserveStorage, auto_deleter_background<boost::shared_ptr<WebSocketConnection> >, true> externalize_shared_ptr(boost::shared_ptr<WebSocketConnection>)’:
http.h:81:75: error: ‘>>’ should be ‘> >’ within a nested template argument list
auto_deleter_background<boost::shared_ptr<WebSocketConnection>>,
^
http.h: At global scope:
http.h:92:75: error: ‘>>’ should be ‘> >’ within a nested template argument list
auto_deleter_background<boost::shared_ptr<WebSocketConnection>>,
^
In file included from httprequest.h:13:0,
from http.cpp:2:
socket.h:16:44: error: ‘>>’ should be ‘> >’ within a nested template argument list
std::vector<boost::shared_ptr<HttpRequest>> connections;
^
/usr/lib/R/etc/Makeconf:141: recipe for target 'http.o' failed
make: *** [http.o] Error 1
ERROR: compilation failed for package ‘httpuv’
* removing ‘/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/httpuv’
* restoring previous ‘/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/httpuv’
The downloaded source packages are in
‘/tmp/RtmpgrlvzH/downloaded_packages’
Warning message:
In install.packages("httpuv") :
installation of package ‘httpuv’ had non-zero exit status
Funny thing is, that it worked before on the same system, but I had to set it up again because my SD Card failed... now it won't let me install it again.
Does anybody have a solution for that?
Your help is very much apreciated!
ClementeProduzente
All 32 comments
Can you try installing the development version of httpuv? I made a change there that should fix support for your compiler.
# First install devtools if needed
devtools::install_github("rstudio/httpuv")
wch
on 24 May 2018
I tried your suggestion, but now I get the following error:
`devtools::install_github("rstudio/httpuv")
Downloading GitHub repo rstudio/httpuv@master
from URL https://api.github.com/repos/rstudio/httpuv/zipball/master
Installing httpuv
'/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet \
CMD INSTALL '/tmp/RtmpYoi9eT/devtools1e18326a2b9e/rstudio-httpuv-6e6204a' \
--library='/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3' \
--install-tests
- installing source package ‘httpuv’ ...
* libs
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports-legacy.cpp -o RcppExports-legacy.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callback.cpp -o callback.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbackqueue.cpp -o callbackqueue.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-unix.cpp -o filedatasource-unix.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-win.cpp -o filedatasource-win.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http.cpp -o http.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c httprequest.cpp -o httprequest.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c httpresponse.cpp -o httpresponse.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c httpuv.cpp -o httpuv.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c set_invalid_parameter.c -o set_invalid_parameter.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c socket.cpp -o socket.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c thread.cpp -o thread.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uvutil.cpp -o uvutil.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c webapplication.cpp -o webapplication.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websockets-base.cpp -o websockets-base.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websockets-hixie76.cpp -o websockets-hixie76.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websockets-hybi03.cpp -o websockets-hybi03.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websockets-ietf.cpp -o websockets-ietf.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websockets.cpp -o websockets.o
cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
(cd libuv \
&& touch aclocal.m4 \
&& touch -r aclocal.m4 configure Makefile.in \
&& CC="gcc -std=gnu99" CFLAGS="-g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-z,relro" ./configure "--quiet")
make --directory=libuv \
HAVE_DTRACE=0
make[1]: Entering directory '/tmp/RtmpYoi9eT/devtools1e18326a2b9e/rstudio-httpuv-6e6204a/src/libuv'
CC src/libuv_la-fs-poll.lo
CC src/libuv_la-inet.lo
CC src/libuv_la-threadpool.lo
CC src/libuv_la-uv-common.lo
CC src/libuv_la-version.lo
CC src/unix/libuv_la-async.lo
CC src/unix/libuv_la-core.lo
CC src/unix/libuv_la-dl.lo
CC src/unix/libuv_la-fs.lo
CC src/unix/libuv_la-getaddrinfo.lo
CC src/unix/libuv_la-getnameinfo.lo
CC src/unix/libuv_la-loop-watcher.lo
CC src/unix/libuv_la-loop.lo
CC src/unix/libuv_la-pipe.lo
CC src/unix/libuv_la-poll.lo
CC src/unix/libuv_la-process.lo
CC src/unix/libuv_la-signal.lo
CC src/unix/libuv_la-stream.lo
CC src/unix/libuv_la-tcp.lo
CC src/unix/libuv_la-thread.lo
CC src/unix/libuv_la-timer.lo
CC src/unix/libuv_la-tty.lo
CC src/unix/libuv_la-udp.lo
CC src/unix/libuv_la-linux-core.lo
CC src/unix/libuv_la-linux-inotify.lo
CC src/unix/libuv_la-linux-syscalls.lo
CC src/unix/libuv_la-procfs-exepath.lo
CC src/unix/libuv_la-proctitle.lo
CC src/unix/libuv_la-sysinfo-loadavg.lo
CC src/unix/libuv_la-sysinfo-memory.lo
CCLD libuv.la
ar:u' modifier ignored sinceD' is the default (see `U')
make[1]: Leaving directory '/tmp/RtmpYoi9eT/devtools1e18326a2b9e/rstudio-httpuv-6e6204a/src/libuv'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http-parser/http_parser.c -o http-parser/http_parser.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha1/sha1.c -o sha1/sha1.o
g++ -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -D_GLIBCXX_ASSERTIONS -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64/base64.cpp -o base64/base64.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o httpuv.so RcppExports-legacy.o RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o http.o httprequest.o httpresponse.o httpuv.o md5.o set_invalid_parameter.o socket.o thread.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o ./libuv/.libs/libuv.a ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -L/usr/lib/R/lib -lR
installing to /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/httpuv/libs
* R
* demo
* tests
* preparing package for lazy loading
* help
* installing help indices
* building package indices
* testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/httpuv/libs/httpuv.so':
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/httpuv/libs/httpuv.so: undefined symbol: pthread_atfork
Error: loading failed
Execution halted
ERROR: loading failed - removing ‘/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/httpuv’
Installation failed: Command failed (1)`
ClementeProduzente
on 25 May 2018
I've made another change to httpuv. Can you try installing again?
wch
on 25 May 2018
👍2
It worked. Thank you very much, @wch !
ClementeProduzente
on 28 May 2018
Hello @wch .
I am also getting same error as @ClementeProduzente while trying to install 'Seurat' R package. httpuv is one of the dependencies. I am unable to resolve the issue by any method : https://github.com/satijalab/seurat/issues/507 and https://www.biostars.org/p/317537/#317558
Please help me out. Thank you in advance :)
Anupriya014
on 30 May 2018
@Anupriya014 Can you provide the output when you run the following:
sessionInfo()
install.packages('httpuv')
@wch
With install.packages('httpuv') ,I'm getting :
In file included from /usr/include/c++/5/memory:81:0,
from /usr/local/lib/R/site-library/BH/include/boost/function/function_base.hpp:16,
from /usr/local/lib/R/site-library/BH/include/boost/function/detail/prologue.hpp:17,
from /usr/local/lib/R/site-library/BH/include/boost/function.hpp:30,
from callbackqueue.h:5,
from callbackqueue.cpp:1:
/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
template
^
/usr/local/lib/R/etc/Makeconf:168: recipe for target 'callbackqueue.o' failed
make: * [callbackqueue.o] Error 1
ERROR: compilation failed for package 'httpuv'
- removing '/home/anupriya/R/x86_64-pc-linux-gnu-library/3.5/httpuv'
The downloaded source packages are in
'/tmp/RtmppTrC6F/downloaded_packages'
Warning message:
In install.packages("httpuv") :
installation of package 'httpuv' had non-zero exit status
sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.4 LTS
Matrix products: default
BLAS: /usr/local/lib/R/lib/libRblas.so
LAPACK: /usr/local/lib/R/lib/libRlapack.so
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.5.0 tools_3.5.0
Anupriya014
on 30 May 2018
Is your copy of R one that you compiled yourself?
Can you include the output of the following? You can run it from a command shell (not R).
R CMD config --all
Also, can you provide the complete output from compiling httpuv? If it's too long to post here, you can put it in a gist at https://gist.github.com/.
wch
on 30 May 2018
@wch
Yes. I compiled R from its source like this :
- Get latest version from here and download the zip folder for it: https://cloud.r-project.org/src/base/R-3/R-3.5.0.tar.gz .
- tar -xvzf R-3.5.0.tar.gz
- sudo ./configure
- sudo make
- sudo make check
- sudo make install
- sudo make install-info
- sudo make install-pdf
This is the result of 'R CMD config --all' :
CC = gcc -std=gnu99
CFLAGS = -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
CPICFLAGS = -fpic
CPP = gcc -std=gnu99 -E
CPPFLAGS =
CXX = g++
CXXCPP = g++ -E
CXXFLAGS = -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
CXXPICFLAGS = -fpic
CXX11 = g++
CXX11STD = -std=gnu++11
CXX11FLAGS = -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
CXX11PICFLAGS = -fpic
CXX14 = g++
CXX14STD = -std=gnu++14
CXX14FLAGS = -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
CXX14PICFLAGS = -fpic
CXX98 = g++
CXX98STD =
CXX98FLAGS = -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
CXX98PICFLAGS = -fpic
CXX17 =
CXX17STD =
CXX17FLAGS =
CXX17PICFLAGS =
CXX1X = g++
CXX1XSTD = -std=gnu++11
CXX1XFLAGS = -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
CXX1XPICFLAGS = -fpic
DYLIB_EXT = .so
DYLIB_LD = gcc -std=gnu99
DYLIB_LDFLAGS = -shared -fopenmp
F77 = gfortran
FFLAGS = -g -O2 -fstack-protector-strong
FPICFLAGS = -fpic
FLIBS = -lgfortran -lm -lquadmath
SAFE_FFLAGS = -g -O2 -fstack-protector-strong -ffloat-store
FC = gfortran
FCFLAGS = -g -O2 -fstack-protector-strong
FCPICFLAGS = -fpic
OBJC =
OBJCFLAGS =
JAVA = /usr/lib/jvm/default-java/jre/bin/java
JAVAC = /usr/lib/jvm/default-java/bin/javac
JAVAH = /usr/lib/jvm/default-java/bin/javah
JAR = /usr/lib/jvm/default-java/bin/jar
JAVA_HOME = /usr/lib/jvm/default-java
JAVA_LIBS = -L/usr/lib/jvm/default-java/jre/lib/amd64/server -ljvm
JAVA_CPPFLAGS = -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux
LDFLAGS = -Wl,-Bsymbolic-functions -Wl,-z,relro
SHLIB_CFLAGS =
SHLIB_CXXLD = g++
SHLIB_CXXLDFLAGS = -shared
SHLIB_CXX98LD = g++
SHLIB_CXX98LDFLAGS = -shared
SHLIB_CXX11LD = g++ -std=gnu++11
SHLIB_CXX11LDFLAGS = -shared
SHLIB_CXX14LD = g++ -std=gnu++14
SHLIB_CXX14LDFLAGS = -shared
SHLIB_CXX17LD =
SHLIB_CXX17LDFLAGS = -shared
SHLIB_EXT = .so
SHLIB_FFLAGS =
SHLIB_LD = gcc -std=gnu99
SHLIB_LDFLAGS = -shared
SHLIB_FCLD = gfortran
SHLIB_FCLDFLAGS = -shared
SHLIB_CXX1XLD = g++ -std=gnu++11
SHLIB_CXX1XLDFLAGS = -shared
TCLTK_CPPFLAGS = -I/usr/include/tcl8.6 -I/usr/include/tcl8.6
TCLTK_LIBS = -L/usr/lib/x86_64-linux-gnu -ltcl8.6 -L/usr/lib/x86_64-linux-gnu -ltk8.6 -lX11 -lXss -lXext
BLAS_LIBS = -lblas
LAPACK_LIBS = -llapack
MAKE = make
LIBnn = lib
LOCAL_SOFT =
COMPILED_BY =
error in install.packages('httpuv') :
https://gist.github.com/Anupriya014/c47b436a63a50d9d13d7bfb2a78c2029
Anupriya014
on 31 May 2018
Had the same error on a Raspberry Pi 3B, helped running R CMD config --all and then installing httpuv from GitHub as root
KasperSkytte
on 3 Jun 2018
👍1
@KasperSkytte Then I'll try this again !
Anupriya014
on 3 Jun 2018
Did it work @Anupriya014?
KasperSkytte
on 4 Jun 2018
@KasperSkytte I wish it did..
step-1 : R CMD config --all
step-2 : git clone https://github.com/rstudio/httpuv.git
step-3 : sudo R CMD INSTALL httpuv
Got this again:
https://gist.github.com/Anupriya014/8fd266f6342a560945dfaf8daf1cecaa
I don't know how to proceed till my analysis package ,i.e., 'Seurat' without installing httpuv then shiny, crosstalk and plotly..
Anupriya014
on 4 Jun 2018
@Anupriya014 Okay. I got it to work as of yesterday, so there is hope :) Maybe we are not doing exactly the same. I have been installing R and shiny to set up a shiny-server, which works fine. So I have not tried only installing just R and shiny as you did. I have also installed the following system packages to work with shiny-server, so maybe you can try installing them and see if that makes a difference:
sudo apt-get update
sudo apt-get install -y gfortran libreadline6-dev libx11-dev libxt-dev libcairo2-dev libbz2-dev liblzma-dev libcurl4-openssl-dev cmake
I also configured R-3.5.0 using the ./configure --enable-R-shlib option to be able to use different R versions, but I doubt it would make a difference in your case. But you can try. Besides, installing R from source installs in /usr/local/lib/R (with R-binary in /usr/local/bin/R) and not /usr/lib/R (with R-binary in /usr/bin/R) like when installing through APT. Maybe it's not using the R version you are installing? Try making a symlink with sudo ln -s /usr/local/bin/R /usr/bin/R.
KasperSkytte
on 4 Jun 2018
@Anupriya014 I believe you're running into this problem:
https://github.com/rstudio/httpuv/issues/110
The short version is that a particular version of a program called GSNAP/GMAP installed a file named semaphore.h in the wrong place, which caused the error regarding sem_t. There a probably a number of files in your /usr/local/include which should not be there -- they should be deleted. The list of files is here:
https://github.com/rstudio/httpuv/issues/110#issuecomment-372879753
I think that deleting /usr/local/include/semaphore.h will fix the sem_t problem, but you should also delete the other .h files that I listed in the comment.
It might also be a good idea to update to a new version of GSNAP/GMAP, in case your version expects those files to be there.
wch
on 7 Jun 2018
👍3
The same error
`/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
template
^
[0m
cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
(cd libuv \
&& touch aclocal.m4 \
&& touch -r aclocal.m4 configure Makefile.in \
&& CC="gcc -std=gnu99" CFLAGS="-DU_STATIC_IMPLEMENTATION -g -O2 -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib64" ./configure "--quiet")
[91m/bin/sh: line 3: ./configure: Permission denied
make: * [libuv/Makefile] Error 126
ERROR: compilation failed for package 'httpuv'
- removing '/opt/microsoft/ropen/3.4.3/lib64/R/library/httpuv'
[0m
Makevars:61: recipe for target 'libuv/Makefile' failed
[91mInstallation failed: Command failed (1)
[0m
R version 3.4.3 (2017-11-30) -- "Kite-Eating Tree"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)`
kuzmenkov111
on 7 Jun 2018
@kuzmenkov111 You have a different issue: rstudio/httpuv#151. We're investigating that one.
wch
on 7 Jun 2018
@kuzmenkov111 If you run this before installing packages, I believe it should work:
options(unzip = "/usr/bin/unzip")
We have a fix that will probably be merged soon.
wch
on 7 Jun 2018
Thank you! I'll check it!
kuzmenkov111
on 7 Jun 2018
@wch
Thanks a lot! I think that's the issue.
I am running the below commands in a server (other users are also there).
If I do 'ls /usr/local/include/' :
access.h bool.h complement.h fopen.h iit-read.h jkweb mem.h semaphore.h types.h
assert.h.bak bytecoding.h compress.h genome.h iit-write.h list.h mode.h separator.h uint8list.h
beato bzip2.h datadir.h genome128_hr.h iitdef.h listdef.h parserange.h sequence.h uintlist.h
bigendian.h chrnum.h doublelist.h genomicpos.h interval.h littleendian.h popcount.h stopwatch.h uinttable.h
bitpack64-read.h chrom.h except.h.bak htslib intlist.h maxent_hr.h samflags.h table.h univinterval.h
bitpack64-readtwo.h comp.h filestring.h iit-read-univ.h intlistdef.h md5.h sarray-read.h tableuint.h
If I do 'sudo ls /usr/local/include/' :
[sudo] password for anupriya:
access.h bool.h complement.h fopen.h iit-read.h jkweb mem.h semaphore.h types.h
assert.h.bak bytecoding.h compress.h genome.h iit-write.h list.h mode.h separator.h uint8list.h
beato bzip2.h datadir.h genome128_hr.h iitdef.h listdef.h parserange.h sequence.h uintlist.h
bigendian.h chrnum.h doublelist.h genomicpos.h interval.h littleendian.h popcount.h stopwatch.h uinttable.h
bitpack64-read.h chrom.h except.h.bak htslib intlist.h maxent_hr.h samflags.h table.h univinterval.h
bitpack64-readtwo.h comp.h filestring.h iit-read-univ.h intlistdef.h md5.h sarray-read.h tableuint.h
So I should delete the ones present in 'ls /usr/local/include/' not with sudo?
Anupriya014
on 8 Jun 2018
@Anupriya014 I suggest deleting these files from /usr/local/include. These are the files installed by GMAP/GSNAP (list is from https://github.com/rstudio/httpuv/issues/110#issuecomment-372879753):
# access.h complement.h iit-read.h mem.h tableuint.h
# assert.h compress.h iit-read-univ.h mode.h types.h
# bigendian.h datadir.h iit-write.h parserange.h uint8list.h
# bitpack64-read.h doublelist.h interval.h popcount.h uintlist.h
# bitpack64-readtwo.h except.h intlistdef.h samflags.h uinttable.h
# bool.h filestring.h intlist.h sarray-read.h uinttableuint.h
# bytecoding.h fopen.h listdef.h semaphore.h univinterval.h
# bzip2.h genome128_hr.h list.h separator.h
# chrnum.h genome.h littleendian.h sequence.h
# chrom.h genomicpos.h maxent_hr.h stopwatch.h
# comp.h iitdef.h md5.h table.h
👍1
For me, this turned out to be caused by /tmp being mounted with noexec turned on. Therefore, any build scripts generated by build tools in /tmp could not be executed.
Remounted /tmp without noexec and was able to successfully build httpuv.
o Remount w/o noexec:L: sudo mount -t tmpfs -o exec tmpfs /tmp
o Remount with noexec: mount -o remount /tmp
jmoore65
on 12 Aug 2018
Hello @wch ,
I have tried on another machine to install again the shiny package, and now I got the following error message:
> install.packages("shiny")
Installing package into ‘/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
also installing the dependencies ‘httpuv’, ‘later’, ‘promises’
trying URL 'https://cran.wu.ac.at/src/contrib/httpuv_1.4.5.tar.gz'
Content type 'application/x-gzip' length 1675895 bytes (1.6 MB)
==================================================
downloaded 1.6 MB
trying URL 'https://cran.wu.ac.at/src/contrib/later_0.7.5.tar.gz'
Content type 'application/x-gzip' length 38900 bytes (37 KB)
==================================================
downloaded 37 KB
trying URL 'https://cran.wu.ac.at/src/contrib/promises_1.0.1.tar.gz'
Content type 'application/x-gzip' length 106866 bytes (104 KB)
==================================================
downloaded 104 KB
trying URL 'https://cran.wu.ac.at/src/contrib/shiny_1.1.0.tar.gz'
Content type 'application/x-gzip' length 2350156 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
* installing *source* package ‘later’ ...
** package ‘later’ successfully unpacked and MD5 sums checked
Running configure script
Using CC=gcc -std=gnu99
Using CFLAGS=-g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g
Using CPPFLAGS=
C11-style threads.h support not detected. Using tinycthread library.
** libs
g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callback_registry.cpp -o callback_registry.o
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/bind.hpp:26,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:2:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:14,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/bind.hpp:26,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.cpp:3:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:14,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/bind.hpp:26,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.cpp:3:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:14,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/bind.hpp:26,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.cpp:3:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:14,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/bind.hpp:26,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.cpp:3:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:14,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/bind.hpp:26,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.cpp:3:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:14,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/bind.hpp:26,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.cpp:3:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:14,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/bind.hpp:26,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.cpp:3:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:14,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/bind.hpp:26,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind.hpp:22,
from callback_registry.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c later.cpp -o later.o
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/function/detail/prologue.hpp:18,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/function.hpp:30,
from callback_registry.h:7,
from later.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:8,
from later.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later.cpp:2:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c later_native.cpp -o later_native.o
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/function/detail/prologue.hpp:18,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/function.hpp:30,
from callback_registry.h:7,
from later_native.cpp:1:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:8,
from later_native.cpp:1:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_native.cpp:1:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_native.cpp:1:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_native.cpp:1:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_native.cpp:1:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_native.cpp:1:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_native.cpp:1:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from callback_registry.h:4,
from later_native.cpp:1:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c later_posix.cpp -o later_posix.o
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/function/detail/prologue.hpp:18,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/function.hpp:30,
from callback_registry.h:7,
from later_posix.cpp:10:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from callback_registry.h:8,
from later_posix.cpp:10:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_posix.cpp:10:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_posix.cpp:10:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_posix.cpp:10:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_posix.cpp:10:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_posix.cpp:10:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from callback_registry.h:8,
from later_posix.cpp:10:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/RcppCommon.h:52,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include/Rcpp.h:27,
from later_posix.cpp:3:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
later_posix.cpp: In function ‘void deInitialize()’:
later_posix.cpp:187:33: warning: ignoring return value of ‘ssize_t write(int, const void*, std::size_t)’, declared with attribute warn_unused_result [-Wunused-result]
write(dummy_pipe_in, "a", 1);
^
g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c later_win32.cpp -o later_win32.o
g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c timer_posix.cpp -o timer_posix.o
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/mem_fn.hpp:22,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/function/detail/prologue.hpp:18,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/function.hpp:30,
from timer_posix.h:7,
from timer_posix.cpp:6:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp: At global scope:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timer_posix.h:6,
from timer_posix.cpp:6:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c timestamp_unix.cpp -o timestamp_unix.o
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17:0,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/6/memory:81:0,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include/boost/shared_ptr.hpp:17,
from timestamp.h:4,
from timestamp_unix.cpp:4:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c timestamp_win32.cpp -o timestamp_win32.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/Rcpp/include" -I"/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/BH/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-saFpct/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tinycthread/tinycthread.c -o tinycthread/tinycthread.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o later.so RcppExports.o callback_registry.o init.o later.o later_native.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o -pthread ./tinycthread/tinycthread.o -L/usr/lib/R/lib -lR
installing to /home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/libs/later.so':
/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later/libs/later.so: undefined symbol: _ZN5boost7atomics6detail8lockpool11scoped_lockD1Ev
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/later’
ERROR: dependency ‘later’ is not available for package ‘promises’
* removing ‘/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/promises’
ERROR: dependencies ‘promises’, ‘later’ are not available for package ‘httpuv’
* removing ‘/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/httpuv’
ERROR: dependencies ‘httpuv’, ‘later’, ‘promises’ are not available for package ‘shiny’
* removing ‘/home/pi/R/arm-unknown-linux-gnueabihf-library/3.3/shiny’
The downloaded source packages are in
‘/tmp/RtmpHQ5HYj/downloaded_packages’
Warning messages:
1: In install.packages("shiny") :
installation of package ‘later’ had non-zero exit status
2: In install.packages("shiny") :
installation of package ‘promises’ had non-zero exit status
3: In install.packages("shiny") :
installation of package ‘httpuv’ had non-zero exit status
4: In install.packages("shiny") :
installation of package ‘shiny’ had non-zero exit status
I don't know what causes the problem, but I have to solve it asap. :/
Do You have another suggestion for me?
I would really appreciate your help!
Thanks!
ClementeProduzente
on 27 Oct 2018
@ClementeProduzente Try installing the development version:
if (!require("devtools"))
install.packages("devtools")
devtools::install_github("rstudio/shiny")
@ClementeProduzente You're encountering an issue the later package that we've seen with other Raspberry Pi users. There's a workaround here: https://github.com/r-lib/later/issues/73#issuecomment-433438182
wch
on 29 Oct 2018
I've made another change to httpuv. Can you try installing again?
HI,
I had the same issues and followed the instructions but still can't manage to install Seurat dependencies. I keep getting installation of package ‘httpuv’ had non-zero exit status for all
any advice?
thanks
irene
ibseq
on 17 Apr 2019
I've made another change to httpuv. Can you try installing again?
HI,
I had the same issues and followed the instructions but still can't manage to install Seurat dependencies. I keep getting installation of package ‘httpuv’ had non-zero exit status for allany advice?
thanks
irene
sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: macOS 10.14.3
Matrix products: default
BLAS/LAPACK: /anaconda3/lib/R/lib/libRblas.dylib
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] Rcpp_1.0.1 ps_1.3.0 prettyunits_1.0.2 rprojroot_1.3-2
[5] digest_0.6.18 crayon_1.3.4 withr_2.1.2 assertthat_0.2.1
[9] R6_2.4.0 backports_1.1.4 magrittr_1.5 rlang_0.3.4
[13] cli_1.1.0 curl_3.3 fs_1.2.6 remotes_2.0.4
[17] testthat_2.0.1 callr_3.1.1 desc_1.2.0 devtools_2.0.2
[21] tools_3.5.1 glue_1.3.1 pkgload_1.0.2 compiler_3.5.1
[25] processx_3.2.1 pkgbuild_1.0.3 sessioninfo_1.1.1 memoise_1.1.0
[29] usethis_1.5.0
install.packages('httpuv')
trying URL 'https://www.stats.bris.ac.uk/R/src/contrib/httpuv_1.5.1.tar.gz'Content type 'application/x-gzip' length 1758514 bytes (1.7 MB)
downloaded 1.7 MB
- installing source package ‘httpuv’ ...
* package ‘httpuv’ successfully unpacked and MD5 sums checked
* libs
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c RcppExports-legacy.cpp -o RcppExports-legacy.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c RcppExports.cpp -o RcppExports.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c callback.cpp -o callback.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c callbackqueue.cpp -o callbackqueue.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c filedatasource-unix.cpp -o filedatasource-unix.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c filedatasource-win.cpp -o filedatasource-win.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c http.cpp -o http.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c httprequest.cpp -o httprequest.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c httpresponse.cpp -o httpresponse.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c httpuv.cpp -o httpuv.o
x86_64-apple-darwin13.4.0-clang -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c md5.c -o md5.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c mime.cpp -o mime.o
x86_64-apple-darwin13.4.0-clang -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c set_invalid_parameter.c -o set_invalid_parameter.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c socket.cpp -o socket.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c staticpath.cpp -o staticpath.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c thread.cpp -o thread.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c utils.cpp -o utils.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c uvutil.cpp -o uvutil.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c webapplication.cpp -o webapplication.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c websockets-base.cpp -o websockets-base.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c websockets-hixie76.cpp -o websockets-hixie76.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c websockets-hybi03.cpp -o websockets-hybi03.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c websockets-ietf.cpp -o websockets-ietf.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c websockets.cpp -o websockets.o
cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
(cd libuv \
&& touch aclocal.m4 \
&& touch -r aclocal.m4 configure Makefile.in \
&& chmod +x configure \
&& CC="x86_64-apple-darwin13.4.0-clang" CFLAGS="-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -fPIC " AR="x86_64-apple-darwin13.4.0-ar" RANLIB="x86_64-apple-darwin13.4.0-ranlib" LDFLAGS="-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/anaconda3/lib -L/anaconda3/lib" ./configure "--quiet")
configure: error: in/private/var/folders/1m/cl4r43zs2kxd_sq9rt8y7wm0010vxd/T/RtmpG4vPKd/R.INSTALL5523541c6f86/httpuv/src/libuv': configure: error: C compiler cannot create executables Seeconfig.log' for more details
make: * [Makevars:67: libuv/Makefile] Error 77
ERROR: compilation failed for package ‘httpuv’ - removing ‘/anaconda3/lib/R/library/httpuv’
The downloaded source packages are in
‘/private/var/folders/1m/cl4r43zs2kxd_sq9rt8y7wm0010vxd/T/RtmpH2c4Bn/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("httpuv") :
installation of package ‘httpuv’ had non-zero exit status
ibseq
on 17 Apr 2019
@wch @jmoore65 @kuzmenkov111 @KasperSkytte @Anupriya014
Hello! Please a need HELP!!!
I'm dealing with httuv error too... Actually I'm triend to install Shiny in AWS but Ubuntut OS.
Actually the errors comes from the websocket library... I think R can't not install websocket packages....
Any idea please?
Here the code:
> install.packages("httpuv",dependencies=TRUE)
Installing package into ‘/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
also installing the dependency ‘websocket’
trying URL 'https://cloud.r-project.org/src/contrib/websocket_1.3.1.tar.gz'
Content type 'application/x-gzip' length 200411 bytes (195 KB)
==================================================
downloaded 195 KB
trying URL 'https://cloud.r-project.org/src/contrib/httpuv_1.5.4.tar.gz'
Content type 'application/x-gzip' length 1803508 bytes (1.7 MB)
==================================================
downloaded 1.7 MB
* installing *source* package ‘websocket’ ...
** package ‘websocket’ successfully unpacked and MD5 sums checked
Found pkg-config cflags and libs!
Using PKG_CFLAGS=
Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1
** libs
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I./lib -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/AsioHeaders/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I./lib -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/AsioHeaders/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c debug.cpp -o debug.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I./lib -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/AsioHeaders/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websocket.cpp -o websocket.o
^C^C/usr/lib/R/etc/Makeconf:168: recipe for target 'websocket.o' failed
make: *** [websocket.o] Interrupt
ERROR: compilation failed for package ‘websocket’
* removing ‘/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/websocket’
* installing *source* package ‘httpuv’ ...
** package ‘httpuv’ successfully unpacked and MD5 sums checked
** libs
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports-legacy.cpp -o RcppExports-legacy.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callback.cpp -o callback.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callback.h:4,
from callback.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/function_base.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callback.h:4,
from callback.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbackqueue.cpp -o callbackqueue.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callbackqueue.h:5,
from callbackqueue.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/function_base.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callbackqueue.h:5,
from callbackqueue.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-unix.cpp -o filedatasource-unix.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/split.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/tz_db_base.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/tz_database.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from filedatasource-unix.cpp:4:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-win.cpp -o filedatasource-win.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fs.cpp -o fs.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/split.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/tz_db_base.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/tz_database.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http.cpp -o http.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from http.h:6,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
^C/usr/lib/R/etc/Makeconf:168: recipe for target 'http.o' failed
make: *** [http.o] Interrupt
ERROR: compilation failed for package ‘httpuv’
* removing ‘/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/httpuv’
The downloaded source packages are in
‘/tmp/Rtmp236IeK/downloaded_packages’
Warning messages:
1: In install.packages("httpuv", dependencies = TRUE) :
installation of package ‘websocket’ had non-zero exit status
2: In install.packages("httpuv", dependencies = TRUE) :
installation of package ‘httpuv’ had non-zero exit status
> install.packages("httpuv",dependencies=TRUE)
Installing package into ‘/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
also installing the dependency ‘websocket’
trying URL 'https://cloud.r-project.org/src/contrib/websocket_1.3.1.tar.gz'
Content type 'application/x-gzip' length 200411 bytes (195 KB)
==================================================
downloaded 195 KB
trying URL 'https://cloud.r-project.org/src/contrib/httpuv_1.5.4.tar.gz'
Content type 'application/x-gzip' length 1803508 bytes (1.7 MB)
==================================================
downloaded 1.7 MB
* installing *source* package ‘websocket’ ...
** package ‘websocket’ successfully unpacked and MD5 sums checked
Found pkg-config cflags and libs!
Using PKG_CFLAGS=
Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1
** libs
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I./lib -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/AsioHeaders/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I./lib -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/AsioHeaders/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c debug.cpp -o debug.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I./lib -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/AsioHeaders/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websocket.cpp -o websocket.o
^C^C/usr/lib/R/etc/Makeconf:168: recipe for target 'websocket.o' failed
make: *** [websocket.o] Interrupt
ERROR: compilation failed for package ‘websocket’
* removing ‘/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/websocket’
* installing *source* package ‘httpuv’ ...
** package ‘httpuv’ successfully unpacked and MD5 sums checked
** libs
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports-legacy.cpp -o RcppExports-legacy.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callback.cpp -o callback.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callback.h:4,
from callback.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/function_base.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callback.h:4,
from callback.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbackqueue.cpp -o callbackqueue.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callbackqueue.h:5,
from callbackqueue.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/function_base.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callbackqueue.h:5,
from callbackqueue.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-unix.cpp -o filedatasource-unix.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/split.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/tz_db_base.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/tz_database.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from filedatasource-unix.cpp:4:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-win.cpp -o filedatasource-win.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fs.cpp -o fs.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/split.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/tz_db_base.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/tz_database.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http.cpp -o http.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from http.h:6,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
^C/usr/lib/R/etc/Makeconf:168: recipe for target 'http.o' failed
make: *** [http.o] Interrupt
ERROR: compilation failed for package ‘httpuv’
* removing ‘/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/httpuv’
The downloaded source packages are in
‘/tmp/Rtmp236IeK/downloaded_packages’
Warning messages:
1: In install.packages("httpuv", dependencies = TRUE) :
installation of package ‘websocket’ had non-zero exit status
2: In install.packages("httpuv", dependencies = TRUE) :
installation of package ‘httpuv’ had non-zero exit status
I'll apreciate!
OskyRosky
on 25 Jul 2020
Can you try without dependencies=TRUE?
jcheng5
on 25 Jul 2020
Thank you jcheng5! The error is the same:
> install.packages("httpuv")
Installing package into ‘/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/httpuv_1.5.4.tar.gz'
Content type 'application/x-gzip' length 1803508 bytes (1.7 MB)
==================================================
downloaded 1.7 MB
* installing *source* package ‘httpuv’ ...
** package ‘httpuv’ successfully unpacked and MD5 sums checked
** libs
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports-legacy.cpp -o RcppExports-legacy.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callback.cpp -o callback.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callback.h:4,
from callback.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/function_base.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callback.h:4,
from callback.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbackqueue.cpp -o callbackqueue.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callbackqueue.h:5,
from callbackqueue.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/function_base.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from callbackqueue.h:5,
from callbackqueue.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-unix.cpp -o filedatasource-unix.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/split.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/tz_db_base.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/tz_database.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from filedatasource-unix.cpp:4:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from filedatasource.h:4,
from filedatasource-unix.cpp:3:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-win.cpp -o filedatasource-win.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fs.cpp -o fs.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/split.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/tz_db_base.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/tz_database.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from fs.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from fs.cpp:2:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http.cpp -o http.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from http.h:6,
from http.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from http.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c httprequest.cpp -o httprequest.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from httprequest.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from httprequest.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from httprequest.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from httprequest.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httprequest.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from httprequest.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httprequest.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from httprequest.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httprequest.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from httprequest.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httprequest.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from httprequest.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httprequest.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from httprequest.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httprequest.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from httprequest.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c httpresponse.cpp -o httpresponse.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/split.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/tz_db_base.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/tz_database.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from httpresponse.h:5,
from httpresponse.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from httpresponse.h:4,
from httpresponse.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c httpuv.cpp -o httpuv.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from httpuv.cpp:8:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from httpuv.cpp:5:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from httpuv.cpp:10:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from httpuv.cpp:5:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httpuv.cpp:10:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from httpuv.cpp:5:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httpuv.cpp:10:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from httpuv.cpp:5:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httpuv.cpp:10:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from httpuv.cpp:5:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httpuv.cpp:10:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from httpuv.cpp:5:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httpuv.cpp:10:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from httpuv.cpp:5:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from httpuv.cpp:10:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from httpuv.cpp:5:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mime.cpp -o mime.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c set_invalid_parameter.c -o set_invalid_parameter.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c socket.cpp -o socket.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from http.h:6,
from socket.h:4,
from socket.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from http.h:5,
from socket.h:4,
from socket.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c staticpath.cpp -o staticpath.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from staticpath.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from staticpath.h:6,
from staticpath.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from staticpath.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from staticpath.h:6,
from staticpath.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from staticpath.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from staticpath.h:6,
from staticpath.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from staticpath.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from staticpath.h:6,
from staticpath.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from staticpath.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from staticpath.h:6,
from staticpath.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from staticpath.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from staticpath.h:6,
from staticpath.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from staticpath.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from staticpath.h:6,
from staticpath.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/split.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/tz_db_base.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/tz_database.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from staticpath.cpp:3:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from staticpath.h:6,
from staticpath.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c thread.cpp -o thread.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from utils.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from utils.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from utils.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from utils.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from utils.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from utils.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from utils.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from utils.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from utils.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from utils.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from utils.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from utils.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/ptime.hpp:12,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:11,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from utils.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from utils.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function/detail/prologue.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/function.hpp:30,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string/split.hpp:16,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/algorithm/string.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/tz_db_base.hpp:24,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/tz_database.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time/local_time/local_time.hpp:19,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/date_time.hpp:15,
from utils.h:13,
from utils.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp: At global scope:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
from /usr/include/c++/7/locale:43,
from /usr/include/c++/7/iomanip:43,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/RcppCommon.h:52,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include/Rcpp.h:27,
from utils.h:11,
from utils.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uvutil.cpp -o uvutil.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from uvutil.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from uvutil.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from uvutil.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from uvutil.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from uvutil.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from uvutil.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from uvutil.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from uvutil.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from uvutil.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from uvutil.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from uvutil.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from uvutil.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from uvutil.h:7,
from uvutil.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from uvutil.h:7,
from uvutil.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -Ilibuv/include -pthread -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/later/include" -DSTRICT_R_HEADERS -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c webapplication.cpp -o webapplication.o
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from webapplication.cpp:1:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from webapplication.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17,
from webapplication.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from webapplication.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from webapplication.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from webapplication.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from webapplication.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from webapplication.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from webapplication.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from webapplication.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from webapplication.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from webapplication.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from webapplication.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from webapplication.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/shared_ptr.hpp:17:0,
from webapplication.cpp:2:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/get_pointer.hpp:14,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/mem_fn.hpp:25,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/mem_fn.hpp:22,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind/bind.hpp:26,
from /home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/BH/include/boost/bind.hpp:22,
from webapplication.cpp:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
^C/usr/lib/R/etc/Makeconf:168: recipe for target 'webapplication.o' failed
make: *** [webapplication.o] Interrupt
ERROR: compilation failed for package ‘httpuv’
* removing ‘/home/ubuntu/R/x86_64-pc-linux-gnu-library/3.4/httpuv’
The downloaded source packages are in
‘/tmp/RtmpbzosWM/downloaded_packages’
Warning message:
In install.packages("httpuv") :
installation of package ‘httpuv’ had non-zero exit status
And now the error (I think), comes from
recipe for target 'webapplication.o' failed
make: *** [webapplication.o] Interrupt
ERROR: compilation failed for package ‘httpuv’
I already installed devtools and Rccp ... I saw that from others github issues I read...
OskyRosky
on 25 Jul 2020
Does your VM have enough memory? See https://github.com/rstudio/httpuv/issues/281
wch
on 25 Jul 2020
👍2
Thank you @wch and @jcheng5
I currently use a t2. micro with 1 vCPUs and 1 Memory(Gib). I read the https://github.com/rstudio/httpuv/issues/281 and yes... it seems I'm out of memory....
Even though, in this tutorials https://www.youtube.com/watch?v=0h9VOQZX6QM and https://www.charlesbordet.com/en/guide-shiny-aws/#3-install-r-and-r-shiny-on-your-new-server they manage with the t2. micro with 1 vCPUs and 1 Memory(Gib)... so I'n still confuse with the VM.
Regards,
OskyRosky
on 25 Jul 2020
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Most helpful comment
@Anupriya014 I believe you're running into this problem:
https://github.com/rstudio/httpuv/issues/110
The short version is that a particular version of a program called GSNAP/GMAP installed a file named semaphore.h in the wrong place, which caused the error regarding
sem_t. There a probably a number of files in your /usr/local/include which should not be there -- they should be deleted. The list of files is here:https://github.com/rstudio/httpuv/issues/110#issuecomment-372879753
I think that deleting /usr/local/include/semaphore.h will fix the
sem_tproblem, but you should also delete the other .h files that I listed in the comment.It might also be a good idea to update to a new version of GSNAP/GMAP, in case your version expects those files to be there.