Seurat: Regressing drosophila cell cycle genes

Created on 12 Nov 2019  路  1Comment  路  Source: satijalab/seurat

The Tirosh cell cycle genes included with Seurat don't apply because I'm working with drosophila data. I've created my own list of s and g2 genes, but I don't know how to implement it.

If anyone knows how to regress out a selection of genes or alter the cc.genes file please let me know!

Thanks,
Alex

Analysis Question

Most helpful comment

You just need to create a list with two elements s and g2. Each contains a character vector that consists of your genes of interest.

cc.genes.drosophila <- list(s = c('gene1', 'gene2'), g2 = c('gene3', 'gene4', 'gene5'))

>All comments

You just need to create a list with two elements s and g2. Each contains a character vector that consists of your genes of interest.

cc.genes.drosophila <- list(s = c('gene1', 'gene2'), g2 = c('gene3', 'gene4', 'gene5'))

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