Readthedocs.org: Build error with build id #8621987

[slochower]

Details:

• Project URL: https://readthedocs.org/projects/pAPRika/
• Build URL(if applicable): https://readthedocs.org/projects/paprika/builds/8621987/
• Read the Docs username(if applicable): slochower

Expected Result

Read the Docs uses .readthedocs.yaml to install a conda environment and build the documentation.

Actual Result

No documentation builds and the output does not indicate where the problem is. The last command to fail is git clean -d -f -f.

[stsewd]

Probably timing out in the conda env creation. This is a known problem in conda, between more channels conda is slower.

https://docs.readthedocs.io/en/stable/guides/build-using-too-many-resources.html

[slochower]

Hmm, that could be! I just added a separate environment for Read the Docs that's pretty trim (no external channels) and I'm still getting no output from the build process.

Separate environment: https://github.com/slochower/pAPRika/blob/readthedocs/docs/rtd.yaml
RTD yaml: https://github.com/slochower/pAPRika/blob/readthedocs/.readthedocs.yml
Build output: https://readthedocs.org/projects/paprika/builds/8622104/

[stsewd]

Can you trying wiping the version first? Admin -> Versions -> Edit -> Wipe

[slochower]

Wiping doesn't appear to have had any effect.

[slochower]

As far as I can tell, it doesn't look like RTD is building from my conda file. Is there a straightforward way to check this?

[stsewd]

I'll try to replicate this locally.

[stsewd]

Sorry, this looks like a bug from our side. I think a temporal solution is to update your config file to v2 https://docs.readthedocs.io/en/stable/config-file/v2.html#migrating-from-v1

I'll try to fix this now.

[slochower]

Thanks! Working now with version 2.

[stsewd]

Reopening till I have a fix for v1 :)

[slochower]

Okay thanks -- sorry for the quick close.

By the way, I get successful builds but some unexpected errors:

/home/docs/checkouts/readthedocs.org/user_builds/paprika/conda/readthedocs/lib/python3.6/site-packages/pytraj/core/../.libs/libresolv-2-c4c53def.5.so: symbol __res_maybe_init version GLIBC_PRIVATE not defined in file libc.so.6 with link time reference

for some modules. Is this also a problem on your end or should I look for something locally? (We can build on Travis, etc., without problems.)

[stsewd]

That looks like something else, maybe a dependency from conda.

[stsewd]

Ok, so, this isn't a _bug_ actually. You were using conda.environment with v1, but in v1 this setting is called conda.file https://docs.readthedocs.io/en/stable/config-file/v1.html#conda-file. We should raise an error tho.

[slochower]

Ah, sorry about that. Thanks for looking into it.