Quarkus: Zip File Closed Exception when building with Gradle

Created on 8 May 2020  路  7Comments  路  Source: quarkusio/quarkus

Describe the bug
Quarkus Gradle build fails after upgrade to 1.4.2.Final using OpenJDK 11, but not with GraalVM 20.

Expected behavior
The build should not fail on OpenJDK 11.

Actual behavior
The build fails with an exception:

java.lang.RuntimeException: java.lang.ExceptionInInitializerError
    at io.quarkus.test.junit.QuarkusTestExtension.beforeEach(QuarkusTestExtension.java:264)
    at org.junit.jupiter.engine.descriptor.TestMethodTestDescriptor.lambda$invokeBeforeEachCallbacks$1(TestMethodTestDescriptor.java:161)
    at org.junit.jupiter.engine.descriptor.TestMethodTestDescriptor.lambda$invokeBeforeMethodsOrCallbacksUntilExceptionOccurs$5(TestMethodTestDescriptor.java:197)
    at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
    at org.junit.jupiter.engine.descriptor.TestMethodTestDescriptor.invokeBeforeMethodsOrCallbacksUntilExceptionOccurs(TestMethodTestDescriptor.java:197)
    at org.junit.jupiter.engine.descriptor.TestMethodTestDescriptor.invokeBeforeEachCallbacks(TestMethodTestDescriptor.java:160)
    at org.junit.jupiter.engine.descriptor.TestMethodTestDescriptor.execute(TestMethodTestDescriptor.java:131)
    at org.junit.jupiter.engine.descriptor.TestMethodTestDescriptor.execute(TestMethodTestDescriptor.java:71)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$5(NodeTestTask.java:135)
    at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$7(NodeTestTask.java:125)
    at org.junit.platform.engine.support.hierarchical.Node.around(Node.java:135)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$8(NodeTestTask.java:123)
    at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.executeRecursively(NodeTestTask.java:122)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.execute(NodeTestTask.java:80)
    at java.base/java.util.ArrayList.forEach(ArrayList.java:1540)
    at org.junit.platform.engine.support.hierarchical.SameThreadHierarchicalTestExecutorService.invokeAll(SameThreadHierarchicalTestExecutorService.java:38)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$5(NodeTestTask.java:139)
    at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$7(NodeTestTask.java:125)
    at org.junit.platform.engine.support.hierarchical.Node.around(Node.java:135)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$8(NodeTestTask.java:123)
    at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.executeRecursively(NodeTestTask.java:122)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.execute(NodeTestTask.java:80)
    at java.base/java.util.ArrayList.forEach(ArrayList.java:1540)
    at org.junit.platform.engine.support.hierarchical.SameThreadHierarchicalTestExecutorService.invokeAll(SameThreadHierarchicalTestExecutorService.java:38)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$5(NodeTestTask.java:139)
    at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$7(NodeTestTask.java:125)
    at org.junit.platform.engine.support.hierarchical.Node.around(Node.java:135)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$8(NodeTestTask.java:123)
    at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.executeRecursively(NodeTestTask.java:122)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.execute(NodeTestTask.java:80)
    at org.junit.platform.engine.support.hierarchical.SameThreadHierarchicalTestExecutorService.submit(SameThreadHierarchicalTestExecutorService.java:32)
    at org.junit.platform.engine.support.hierarchical.HierarchicalTestExecutor.execute(HierarchicalTestExecutor.java:57)
    at org.junit.platform.engine.support.hierarchical.HierarchicalTestEngine.execute(HierarchicalTestEngine.java:51)
    at org.junit.platform.launcher.core.DefaultLauncher.execute(DefaultLauncher.java:248)
    at org.junit.platform.launcher.core.DefaultLauncher.lambda$execute$5(DefaultLauncher.java:211)
    at org.junit.platform.launcher.core.DefaultLauncher.withInterceptedStreams(DefaultLauncher.java:226)
    at org.junit.platform.launcher.core.DefaultLauncher.execute(DefaultLauncher.java:199)
    at org.junit.platform.launcher.core.DefaultLauncher.execute(DefaultLauncher.java:132)
    at org.gradle.api.internal.tasks.testing.junitplatform.JUnitPlatformTestClassProcessor$CollectAllTestClassesExecutor.processAllTestClasses(JUnitPlatformTestClassProcessor.java:99)
    at org.gradle.api.internal.tasks.testing.junitplatform.JUnitPlatformTestClassProcessor$CollectAllTestClassesExecutor.access$000(JUnitPlatformTestClassProcessor.java:79)
    at org.gradle.api.internal.tasks.testing.junitplatform.JUnitPlatformTestClassProcessor.stop(JUnitPlatformTestClassProcessor.java:75)
    at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.base/java.lang.reflect.Method.invoke(Method.java:566)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
    at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94)
    at com.sun.proxy.$Proxy5.stop(Unknown Source)
    at org.gradle.api.internal.tasks.testing.worker.TestWorker.stop(TestWorker.java:132)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.base/java.lang.reflect.Method.invoke(Method.java:566)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:182)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:164)
    at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:413)
    at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
    at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:48)
    at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
    at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
    at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:56)
    at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.lang.ExceptionInInitializerError
    at java.base/java.lang.Class.forName0(Native Method)
    at java.base/java.lang.Class.forName(Class.java:398)
    at io.quarkus.runner.bootstrap.StartupActionImpl.run(StartupActionImpl.java:161)
    at io.quarkus.test.junit.QuarkusTestExtension.doJavaStart(QuarkusTestExtension.java:151)
    at io.quarkus.test.junit.QuarkusTestExtension.ensureStarted(QuarkusTestExtension.java:278)
    at io.quarkus.test.junit.QuarkusTestExtension.beforeAll(QuarkusTestExtension.java:301)
    at org.junit.jupiter.engine.descriptor.ClassBasedTestDescriptor.lambda$invokeBeforeAllCallbacks$7(ClassBasedTestDescriptor.java:359)
    at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
    at org.junit.jupiter.engine.descriptor.ClassBasedTestDescriptor.invokeBeforeAllCallbacks(ClassBasedTestDescriptor.java:359)
    at org.junit.jupiter.engine.descriptor.ClassBasedTestDescriptor.before(ClassBasedTestDescriptor.java:189)
    at org.junit.jupiter.engine.descriptor.ClassBasedTestDescriptor.before(ClassBasedTestDescriptor.java:78)
    at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$5(NodeTestTask.java:132)
    ... 54 more
Caused by: java.lang.RuntimeException: Failed to start quarkus
    at io.quarkus.runner.ApplicationImpl.<clinit>(ApplicationImpl.zig:526)
    ... 66 more
Caused by: java.lang.IllegalStateException: zip file closed
    at java.base/java.util.zip.ZipFile.ensureOpen(ZipFile.java:915)
    at java.base/java.util.zip.ZipFile.getInputStream(ZipFile.java:378)
    at java.base/java.util.jar.JarFile.getBytes(JarFile.java:800)
    at java.base/java.util.jar.JarFile.getManifestFromReference(JarFile.java:421)
    at java.base/java.util.jar.JarFile.getManifest(JarFile.java:408)
    at io.quarkus.bootstrap.classloading.JarClassPathElement.getManifest(JarClassPathElement.java:149)
    at io.quarkus.bootstrap.classloading.QuarkusClassLoader.definePackage(QuarkusClassLoader.java:375)
    at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:350)
    at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:310)
    at java.base/java.lang.Class.forName0(Native Method)
    at java.base/java.lang.Class.forName(Class.java:398)
    at io.quarkus.deployment.steps.HibernateValidatorProcessor$build31.deploy_0(HibernateValidatorProcessor$build31.zig:71)
    at io.quarkus.deployment.steps.HibernateValidatorProcessor$build31.deploy(HibernateValidatorProcessor$build31.zig:36)
    at io.quarkus.runner.ApplicationImpl.<clinit>(ApplicationImpl.zig:461)
    ... 66 more

To Reproduce
Steps to reproduce the behavior:

  1. run ./gradlew build

Configuration

# Add your application.properties here, if applicable.

Screenshots
(If applicable, add screenshots to help explain your problem.)

Environment (please complete the following information):

  • Output of uname -a or ver: Linux voyager 5.6.11-arch1-1 #1 SMP PREEMPT Wed, 06 May 2020 17:32:37 +0000 x86_64 GNU/Linux
  • Output of java -version: 
openjdk version "11.0.7" 2020-04-14
OpenJDK Runtime Environment AdoptOpenJDK (build 11.0.7+10)
OpenJDK 64-Bit Server VM AdoptOpenJDK (build 11.0.7+10, mixed mode)
  • GraalVM version (if different from Java): 
openjdk version "11.0.6" 2020-01-14
OpenJDK Runtime Environment GraalVM CE 20.0.0 (build 11.0.6+9-jvmci-20.0-b02)
OpenJDK 64-Bit Server VM GraalVM CE 20.0.0 (build 11.0.6+9-jvmci-20.0-b02, mixed mode, sharing)
  • Quarkus version or git rev: 1.4.2.Final
  • Build tool (ie. output of mvnw --version or gradlew --version): Gradle 6.4

Edit: After playing around I noticed the failure also on GraalVM, but not that frequent.

kinbug
Source
picture pschyma

Most helpful comment

@joemat ./gradlew build works for me in your project after starting a mongo db.

Some observations:

  1. Executing ./gradlew build compiles and tests the project without a failure. But after a couple of consecutive executions Gradle stops recompiling and testing, since it does not consider the tasks as changed anymore. This seems to be related to the Gradle Daemon: every time when Gradle recompiles the code, it informs about starting a new Daemon because the previous one is not compatible. After a while it accepts the already started one and does not see any changes to compile.
  2. Executing ./gradlew clean build triggers the exception.
picture pschyma on 11 May 2020
👍2

All 7 comments

cc @aloubyansky since you might have already fixed this or looked into similar issues.

geoand picture geoand on 8 May 2020

There appears to be a PR with a potential fix for this issue https://github.com/quarkusio/quarkus/pull/9170

jaikiran picture jaikiran on 8 May 2020

Mind providing a reproducer project? I created one using the following command and it works for me:

mvn io.quarkus:quarkus-maven-plugin:1.4.2.Final:create \
    -DprojectGroupId=micro.apps \
    -DprojectArtifactId=greeting-quarkus \
    -DprojectVersion=0.1.0 \
    -DclassName="micro.apps.greeting.GreetingResource" \
    -Dpath="/greeting" \
    -Dextensions="resteasy-jsonb" \
  -DbuildTool=gradle
gastaldi picture gastaldi on 9 May 2020

I'm trying to assemble one @gastaldi but it seems a bit tricky.

For what I can say now for the original project. The project consists of a cli (Quarkus + Java 11), service (Quarkus + Kotlin), service-client (MP client) and a model (Java 11) module. cli uses the REST client from service-client and all modules depend on model.

Here I see:

  • It fails on OpenJDK in approximately 90% of all build attempts.
  • Some times the clean task does not work because the folder cli/build cannot be deleted. I need to kill every Gradle daemon manually (./gradlew --stop gets stuck) to make clean working again. The stuck daemon also has a 100% CPU usage.
  • Sometimes running quarkusDev on the service complains about a missing jandex index for the classes from model module - although there is an empty META-INF/beans.xml file present (this never happened before).
  • Reverting the platform version to 1.4.1.Final removes the observations above (still using 1.4.2.Final plugin does not fail the build but the result is not runnable).

I tried also Gradle 6.3 with the same observations.

Did 1.4.2.Final introduce any major changes how Quarkus handles Gradle?

pschyma picture pschyma on 10 May 2020

I had the same with my project yesterday, went back to 1.4.1 final and it worked again.

It's a very small backend project, maybe you can use this to find the cause

https://github.com/COVID-Report/wirvsvirus-backend-quarkus

joemat picture joemat on 10 May 2020
👍1

@joemat ./gradlew build works for me in your project after starting a mongo db.

Some observations:

  1. Executing ./gradlew build compiles and tests the project without a failure. But after a couple of consecutive executions Gradle stops recompiling and testing, since it does not consider the tasks as changed anymore. This seems to be related to the Gradle Daemon: every time when Gradle recompiles the code, it informs about starting a new Daemon because the previous one is not compatible. After a while it accepts the already started one and does not see any changes to compile.
  2. Executing ./gradlew clean build triggers the exception.
pschyma picture pschyma on 11 May 2020
👍2

https://github.com/quarkusio/quarkus/pull/9170 has been merged, so closing this issue.

jaikiran picture jaikiran on 13 May 2020
👍1
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