Pytorch_geometric: unable to install torch_sparse ，torch_scatter on my ubuntu16.04

Created on 16 Feb 2020 · 6Comments · Source: rusty1s/pytorch_geometric

📚 Installation

Environment

OS:ubuntu16.04
Python version:Python 3.7.6
PyTorch version:1.1.0
CUDA/cuDNN version:9.0.176
GCC version:5.4.0
How did you try to install PyTorch Geometric and its extensions (pip, source):pip
Any other relevant information: my pytorch environment is bulit via conda

Checklist

[yes ] I followed the installation guide.
[yes ] I cannot find my error message in the FAQ.
[yes ] I set up CUDA correctly and can compile CUDA code via nvcc.
[ no] I have cloned the repository and tried a manual installation from source.
[no ] I do have multiple CUDA versions on my machine.
[yes ] I checked if the official extension example runs on my machine.
[no ] The offical extension example runs on my machine.

Additional context

(pt1) lirui@lirui:~$ pip install --verbose --no-cache-dir torch-scatter
Non-user install because site-packages writeable
Created temporary directory: /tmp/pip-ephem-wheel-cache-4hk8xft8
Created temporary directory: /tmp/pip-req-tracker-t99has2e
Initialized build tracking at /tmp/pip-req-tracker-t99has2e
Created build tracker: /tmp/pip-req-tracker-t99has2e
Entered build tracker: /tmp/pip-req-tracker-t99has2e
Created temporary directory: /tmp/pip-install-jxdlw8rc
1 location(s) to search for versions of torch-scatter:

https://pypi.org/simple/torch-scatter/
Fetching project page and analyzing links: https://pypi.org/simple/torch-scatter/
Getting page https://pypi.org/simple/torch-scatter/
Found index url https://pypi.org/simple
Starting new HTTPS connection (1): pypi.org:443
https://pypi.org:443 "GET /simple/torch-scatter/ HTTP/1.1" 200 1489
Found link https://files.pythonhosted.org/packages/29/96/566ac314e796d4b07209a3b88cc7a8d2e8582d55819e33f72e6c0e8d8216/torch_scatter-0.3.0.tar.gz#sha256=9e5e5a6efa4ef45f584e8611f83690d799370dd122b862646751ae112b685b50 (from https://pypi.org/simple/torch-scatter/), version: 0.3.0
Found link https://files.pythonhosted.org/packages/6a/b0/ecffacddf573c147c70c6e43ce05d24f007155ce3fb436959d3d2a24da46/torch_scatter-1.0.2.tar.gz#sha256=ccda794c25265b3450206b7fb0bf74f16a0b45f3f72d9547a42e44648a32faee (from https://pypi.org/simple/torch-scatter/), version: 1.0.2
Found link https://files.pythonhosted.org/packages/08/09/07b106f3e74246f4ecf6517013a053b6dd7486c4f889d81f39adc662431f/torch_scatter-1.0.3.tar.gz#sha256=e626993194819ba65cdf89a52fbbb7780569d9e157bc63dbef13ead6b7a33930 (from https://pypi.org/simple/torch-scatter/), version: 1.0.3
Found link https://files.pythonhosted.org/packages/2d/70/df2bc259d9606f00854ca43b6839f9047ec44900563435e0067584c93864/torch_scatter-1.0.4.tar.gz#sha256=ec004d687e47da9d5477407849d815629fc8b571ee87aeeebf6af8ed6f16defc (from https://pypi.org/simple/torch-scatter/), version: 1.0.4
Found link https://files.pythonhosted.org/packages/2f/97/c50a6aeaedc6924180c6f5810d2a7405ce11aa9b82ba4284badad549d665/torch_scatter-1.1.0.tar.gz#sha256=e534cc2ecb2f9d9b559b1513cd411737d26ea5585d1d65ff571fec55f42a49de (from https://pypi.org/simple/torch-scatter/), version: 1.1.0
Found link https://files.pythonhosted.org/packages/91/5f/eb1d3ef3810cb1165859d40db4d9ee6d7f1dfef97d7e5c34010055f43d95/torch_scatter-1.1.1.tar.gz#sha256=9db7f2c0a5cddf6cfde633e33db7c2c94eaab163e9f8edb46460d6414cc97917 (from https://pypi.org/simple/torch-scatter/), version: 1.1.1
Found link https://files.pythonhosted.org/packages/d4/83/67eeea00c2db1959e2ff95d8680dbd756977bfab254bda8658f09dc3bc11/torch_scatter-1.1.2.tar.gz#sha256=766c2476f5da5ffc25fa8e249ccf50f594031cdce3922abb23559e8e3b14337a (from https://pypi.org/simple/torch-scatter/), version: 1.1.2
Found link https://files.pythonhosted.org/packages/07/c0/f7ac424496f4a3bcb31aa993fba29077a6d42fc2624c66e90b58a566a98e/torch_scatter-1.2.0.tar.gz#sha256=3a0259105d07d264c740eec8e4267260a5c144cf55472abd26022fff4fd73281 (from https://pypi.org/simple/torch-scatter/), version: 1.2.0
Found link https://files.pythonhosted.org/packages/24/b7/680c3b392a4b55a0ebfb480aabb0d5c188e94bb21790104175c8cd614947/torch_scatter-1.3.0.tar.gz#sha256=bf7d561b8ef12b39a99f5797c90b989a0ce2c3ee4de74dff3b170f2d8566e1d4 (from https://pypi.org/simple/torch-scatter/), version: 1.3.0
Found link https://files.pythonhosted.org/packages/35/d4/750403a8aa32cdb3d2d05849c6a10e4e0604de5e0cc94b81a0d0d69a75f3/torch_scatter-1.3.1.tar.gz#sha256=54cbad248350165ddc921ded3fe7a69be5d30c6536273a1a3282e375289f86ec (from https://pypi.org/simple/torch-scatter/), version: 1.3.1
Found link https://files.pythonhosted.org/packages/30/d9/1d5fd4d183dabd9e0a1f7008ecf83318432359f4cc27480e3f2212f44d9c/torch_scatter-1.3.2.tar.gz#sha256=890e8f9da2d57431912182960b71bf6c56397de42c2464907a6e9c583164bf06 (from https://pypi.org/simple/torch-scatter/), version: 1.3.2
Found link https://files.pythonhosted.org/packages/b8/c3/8bad887ffa55c86f120ef5ae252dc0e357b3bd956d9fbf45242bacc46290/torch_scatter-1.4.0.tar.gz#sha256=5999ef256154e5a99445118c1a53f95cf0f95ef7b5cd8d3b256101125479cc2e (from https://pypi.org/simple/torch-scatter/), version: 1.4.0
Found link https://files.pythonhosted.org/packages/28/f7/fa4e61587169924203a32416f7835939fdd79994eaa429b4f8ef8f0e07e2/torch_scatter-2.0.2.tar.gz#sha256=49d3059b7be93d3f2c328fdc6daa3a8479e3dc4a50c8247aef913177122db671 (from https://pypi.org/simple/torch-scatter/), version: 2.0.2
Found link https://files.pythonhosted.org/packages/36/2a/ef3d841ec577e2231662ef86af983c6c7c7d509a0e1d9f12949d0218b492/torch_scatter-2.0.3.tar.gz#sha256=1c4b9cb0f6a195c20d8c4b6230d086cae6965b7eb08f80bd2ec050a094b8e563 (from https://pypi.org/simple/torch-scatter/) (requires-python:>=3.6), version: 2.0.3
Given no hashes to check 14 links for project 'torch-scatter': discarding no candidates
Using version 2.0.3 (newest of versions: 0.3.0, 1.0.2, 1.0.3, 1.0.4, 1.1.0, 1.1.1, 1.1.2, 1.2.0, 1.3.0, 1.3.1, 1.3.2, 1.4.0, 2.0.2, 2.0.3)
Collecting torch-scatter
Created temporary directory: /tmp/pip-unpack-z_g5hxtn
Starting new HTTPS connection (1): files.pythonhosted.org:443
https://files.pythonhosted.org:443 "GET /packages/36/2a/ef3d841ec577e2231662ef86af983c6c7c7d509a0e1d9f12949d0218b492/torch_scatter-2.0.3.tar.gz HTTP/1.1" 200 20365
Downloading torch_scatter-2.0.3.tar.gz (20 kB)
Added torch-scatter from https://files.pythonhosted.org/packages/36/2a/ef3d841ec577e2231662ef86af983c6c7c7d509a0e1d9f12949d0218b492/torch_scatter-2.0.3.tar.gz#sha256=1c4b9cb0f6a195c20d8c4b6230d086cae6965b7eb08f80bd2ec050a094b8e563 to build tracker '/tmp/pip-req-tracker-t99has2e'
Running setup.py (path:/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py) egg_info for package torch-scatter
Running command python setup.py egg_info
running egg_info
creating /tmp/pip-install-jxdlw8rc/torch-scatter/pip-egg-info/torch_scatter.egg-info
writing /tmp/pip-install-jxdlw8rc/torch-scatter/pip-egg-info/torch_scatter.egg-info/PKG-INFO
writing dependency_links to /tmp/pip-install-jxdlw8rc/torch-scatter/pip-egg-info/torch_scatter.egg-info/dependency_links.txt
writing top-level names to /tmp/pip-install-jxdlw8rc/torch-scatter/pip-egg-info/torch_scatter.egg-info/top_level.txt
writing manifest file '/tmp/pip-install-jxdlw8rc/torch-scatter/pip-egg-info/torch_scatter.egg-info/SOURCES.txt'
reading manifest file '/tmp/pip-install-jxdlw8rc/torch-scatter/pip-egg-info/torch_scatter.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '' found under directory 'test'
writing manifest file '/tmp/pip-install-jxdlw8rc/torch-scatter/pip-egg-info/torch_scatter.egg-info/SOURCES.txt'
Source in /tmp/pip-install-jxdlw8rc/torch-scatter has version 2.0.3, which satisfies requirement torch-scatter from https://files.pythonhosted.org/packages/36/2a/ef3d841ec577e2231662ef86af983c6c7c7d509a0e1d9f12949d0218b492/torch_scatter-2.0.3.tar.gz#sha256=1c4b9cb0f6a195c20d8c4b6230d086cae6965b7eb08f80bd2ec050a094b8e563
Removed torch-scatter from https://files.pythonhosted.org/packages/36/2a/ef3d841ec577e2231662ef86af983c6c7c7d509a0e1d9f12949d0218b492/torch_scatter-2.0.3.tar.gz#sha256=1c4b9cb0f6a195c20d8c4b6230d086cae6965b7eb08f80bd2ec050a094b8e563 from build tracker '/tmp/pip-req-tracker-t99has2e'
Building wheels for collected packages: torch-scatter
Created temporary directory: /tmp/pip-wheel-4yvxj3jl
Building wheel for torch-scatter (setup.py) ... Destination directory: /tmp/pip-wheel-4yvxj3jl
Running command /home/lirui/anaconda3/envs/pt1/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py'"'"'; __file__='"'"'/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4yvxj3jl
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/torch_scatter
copying torch_scatter/segment_coo.py -> build/lib.linux-x86_64-3.7/torch_scatter
copying torch_scatter/scatter.py -> build/lib.linux-x86_64-3.7/torch_scatter
copying torch_scatter/utils.py -> build/lib.linux-x86_64-3.7/torch_scatter
copying torch_scatter/segment_csr.py -> build/lib.linux-x86_64-3.7/torch_scatter
copying torch_scatter/__init__.py -> build/lib.linux-x86_64-3.7/torch_scatter
creating build/lib.linux-x86_64-3.7/torch_scatter/composite
copying torch_scatter/composite/softmax.py -> build/lib.linux-x86_64-3.7/torch_scatter/composite
copying torch_scatter/composite/std.py -> build/lib.linux-x86_64-3.7/torch_scatter/composite
copying torch_scatter/composite/logsumexp.py -> build/lib.linux-x86_64-3.7/torch_scatter/composite
copying torch_scatter/composite/__init__.py -> build/lib.linux-x86_64-3.7/torch_scatter/composite
running build_ext
building 'torch_scatter._version' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/tmp
creating build/temp.linux-x86_64-3.7/tmp/pip-install-jxdlw8rc
creating build/temp.linux-x86_64-3.7/tmp/pip-install-jxdlw8rc/torch-scatter
creating build/temp.linux-x86_64-3.7/tmp/pip-install-jxdlw8rc/torch-scatter/csrc
gcc -pthread -B /home/lirui/anaconda3/envs/pt1/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DWITH_CUDA -I/tmp/pip-install-jxdlw8rc/torch-scatter/csrc -I/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include -I/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include/TH -I/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda/include -I/home/lirui/anaconda3/envs/pt1/include/python3.7m -c /tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.cpp -o build/temp.linux-x86_64-3.7/tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.o -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=_version -D_GLIBCXX_USE_CXX11_ABI=0 -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=_segment_coo -D_GLIBCXX_USE_CXX11_ABI=0 -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=_scatter -D_GLIBCXX_USE_CXX11_ABI=0 -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=_segment_csr -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
:0:0: warning: "TORCH_EXTENSION_NAME" redefined
:0:0: note: this is the location of the previous definition
:0:0: warning: "TORCH_EXTENSION_NAME" redefined
:0:0: note: this is the location of the previous definition
:0:0: warning: "TORCH_EXTENSION_NAME" redefined
:0:0: note: this is the location of the previous definition
/tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.cpp:21:5: error: ‘RegisterOperators’ is not a member of ‘torch’
torch::RegisterOperators().op("torch_scatter::cuda_version", &cuda_version);
^
/tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.cpp:21:5: note: suggested alternative:
In file included from /home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include/torch/script.h:5:0,
from /tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.cpp:2:
/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include/torch/csrc/jit/custom_operator.h:221:18: note: ‘torch::jit::RegisterOperators’
struct TORCH_API RegisterOperators {
^
/tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.cpp:20:13: warning: ‘registry’ defined but not used [-Wunused-variable]
static auto registry =
^
error: command 'gcc' failed with exit status 1
error
ERROR: Failed building wheel for torch-scatter
Running setup.py clean for torch-scatter
Running command /home/lirui/anaconda3/envs/pt1/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py'"'"'; __file__='"'"'/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
running clean
removing 'build/temp.linux-x86_64-3.7' (and everything under it)
removing 'build/lib.linux-x86_64-3.7' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
removing 'build'
Failed to build torch-scatter
Installing collected packages: torch-scatter
Created temporary directory: /tmp/pip-record-tjwnwujl
Running command /home/lirui/anaconda3/envs/pt1/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py'"'"'; __file__='"'"'/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-tjwnwujl/install-record.txt --single-version-externally-managed --compile --install-headers /home/lirui/anaconda3/envs/pt1/include/python3.7m/torch-scatter
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/torch_scatter
copying torch_scatter/segment_coo.py -> build/lib.linux-x86_64-3.7/torch_scatter
copying torch_scatter/scatter.py -> build/lib.linux-x86_64-3.7/torch_scatter
copying torch_scatter/utils.py -> build/lib.linux-x86_64-3.7/torch_scatter
copying torch_scatter/segment_csr.py -> build/lib.linux-x86_64-3.7/torch_scatter
copying torch_scatter/__init__.py -> build/lib.linux-x86_64-3.7/torch_scatter
creating build/lib.linux-x86_64-3.7/torch_scatter/composite
copying torch_scatter/composite/softmax.py -> build/lib.linux-x86_64-3.7/torch_scatter/composite
copying torch_scatter/composite/std.py -> build/lib.linux-x86_64-3.7/torch_scatter/composite
copying torch_scatter/composite/logsumexp.py -> build/lib.linux-x86_64-3.7/torch_scatter/composite
copying torch_scatter/composite/__init__.py -> build/lib.linux-x86_64-3.7/torch_scatter/composite
running build_ext
building 'torch_scatter._version' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/tmp
creating build/temp.linux-x86_64-3.7/tmp/pip-install-jxdlw8rc
creating build/temp.linux-x86_64-3.7/tmp/pip-install-jxdlw8rc/torch-scatter
creating build/temp.linux-x86_64-3.7/tmp/pip-install-jxdlw8rc/torch-scatter/csrc
gcc -pthread -B /home/lirui/anaconda3/envs/pt1/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DWITH_CUDA -I/tmp/pip-install-jxdlw8rc/torch-scatter/csrc -I/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include -I/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include/TH -I/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda/include -I/home/lirui/anaconda3/envs/pt1/include/python3.7m -c /tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.cpp -o build/temp.linux-x86_64-3.7/tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.o -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=_version -D_GLIBCXX_USE_CXX11_ABI=0 -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=_segment_coo -D_GLIBCXX_USE_CXX11_ABI=0 -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=_scatter -D_GLIBCXX_USE_CXX11_ABI=0 -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=_segment_csr -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
:0:0: warning: "TORCH_EXTENSION_NAME" redefined
:0:0: note: this is the location of the previous definition
:0:0: warning: "TORCH_EXTENSION_NAME" redefined
:0:0: note: this is the location of the previous definition
:0:0: warning: "TORCH_EXTENSION_NAME" redefined
:0:0: note: this is the location of the previous definition
/tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.cpp:21:5: error: ‘RegisterOperators’ is not a member of ‘torch’
torch::RegisterOperators().op("torch_scatter::cuda_version", &cuda_version);
^
/tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.cpp:21:5: note: suggested alternative:
In file included from /home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include/torch/script.h:5:0,
from /tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.cpp:2:
/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/torch/include/torch/csrc/jit/custom_operator.h:221:18: note: ‘torch::jit::RegisterOperators’
struct TORCH_API RegisterOperators {
^
/tmp/pip-install-jxdlw8rc/torch-scatter/csrc/version.cpp:20:13: warning: ‘registry’ defined but not used [-Wunused-variable]
static auto registry =
^
error: command 'gcc' failed with exit status 1
Running setup.py install for torch-scatter ... error
Cleaning up...
Removing source in /tmp/pip-install-jxdlw8rc/torch-scatter
Removed build tracker: '/tmp/pip-req-tracker-t99has2e'
ERROR: Command errored out with exit status 1: /home/lirui/anaconda3/envs/pt1/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py'"'"'; __file__='"'"'/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-tjwnwujl/install-record.txt --single-version-externally-managed --compile --install-headers /home/lirui/anaconda3/envs/pt1/include/python3.7m/torch-scatter Check the logs for full command output.
Exception information:
Traceback (most recent call last):
File "/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 186, in _main
status = self.run(options, args)
File "/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/pip/_internal/commands/install.py", line 404, in run
use_user_site=options.use_user_site,
File "/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/pip/_internal/req/__init__.py", line 71, in install_given_reqs
*kwargs
File "/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/pip/_internal/req/req_install.py", line 829, in install
scheme=scheme,
File "/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/pip/_internal/operations/install/legacy.py", line 72, in install
cwd=install_req.unpacked_source_directory,
File "/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/pip/_internal/utils/subprocess.py", line 275, in runner
spinner=spinner,
File "/home/lirui/anaconda3/envs/pt1/lib/python3.7/site-packages/pip/_internal/utils/subprocess.py", line 242, in call_subprocess
raise InstallationError(exc_msg)
pip._internal.exceptions.InstallationError: Command errored out with exit status 1: /home/lirui/anaconda3/envs/pt1/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py'"'"'; __file__='"'"'/tmp/pip-install-jxdlw8rc/torch-scatter/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-tjwnwujl/install-record.txt --single-version-externally-managed --compile --install-headers /home/lirui/anaconda3/envs/pt1/include/python3.7m/torch-scatter Check the logs for full command output.
1 location(s) to search for versions of pip:
https://pypi.org/simple/pip/
Fetching project page and analyzing links: https://pypi.org/simple/pip/
Getting page https://pypi.org/simple/pip/
Found index url https://pypi.org/simple
Starting new HTTPS connection (1): pypi.org:443
https://pypi.org:443 "GET /simple/pip/ HTTP/1.1" 200 12868
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jinxinbao

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torch-scatter==1.4.0
torch-sparse==0.4.3
torch-cluster==1.4.5

rusty1s on 5 Mar 2020

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All 6 comments

The latest releases require PyTorch 1.4. If you do not want to upgrade, try torch-scatter=1.4.0 and torch-sparse=0.4.4.

rusty1s on 16 Feb 2020

Thank you very much. I have installed the two packages sucessfully

jinxinbao on 16 Feb 2020

@rusty1s Can you provide a list about the old version(pytorch1.1, 1.2 with scatter==? ,torch-sparse==? and so on) about the installation ? Due to some reason, we can't update pytorch to 1.4(especiall cuda10.1).

kangkang59812 on 5 Mar 2020

torch-scatter==1.4.0
torch-sparse==0.4.3
torch-cluster==1.4.5

rusty1s on 5 Mar 2020

👍3 ❤1

@rusty1s hi, thank you for great work! I am installing geometric with pytorch==1.1.0 on cuda 90, could you help me with the correct version of "torch-spline-conv" and "torch-geometric"? Thank you so much!

torch-scatter==1.4.0
torch-sparse==0.4.3
torch-cluster==1.4.5

Junpliu on 18 Nov 2020

For PyTorch 1.1.0, you want to install

torch-geometric==1.3.2
torch-spline-conv==1.1.0

You can always look that up by yourself by inspecting the release sections, e.g., see here.

rusty1s on 18 Nov 2020

❤1 😄1 👍1

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