Protobuf: C++ compilation of rule '@com_google_protobuf//:protoc_lib' failed (MacOS 10.14)

Created on 8 Nov 2018  路  3Comments  路  Source: protocolbuffers/protobuf

Hello everyone!
I'm working with Magenta and during its testing, I got a bunch of errors.

OS: MacOS 10.14

I followed the next instructions:
https://github.com/tensorflow/magenta#development-environment

On step:
bazel test //magenta/....

Got the error:

WARNING: Processed legacy workspace file /Users/admin/magenta/tools/bazel.rc. This file will not be processed in the next release of Bazel. Please read bazelbuild/bazel#6319 for further information, including how to upgrade.
Starting local Bazel server and connecting to it...
INFO: Analysed 282 targets (56 packages loaded).
INFO: Found 226 targets and 56 test targets...
ERROR: /private/var/tmp/_bazel_admin/1176f1bbe090aa2200898e6d3db6281e/external/com_google_protobuf/BUILD:70:1: C++ compilation of rule '@com_google_protobuf//:protobuf_lite' failed (Exit 1)
In file included from external/com_google_protobuf/src/google/protobuf/implicit_weak_message.cc:31:
external/com_google_protobuf/src/google/protobuf/implicit_weak_message.h:57:41: error: allocating an object of abstract class type 'google::protobuf::internal::ImplicitWeakMessage'
MessageLite* New() const { return new ImplicitWeakMessage; }
^
/usr/local/include/google/protobuf/message_lite.h:247:15: note: unimplemented pure virtual method 'ByteSize' in 'ImplicitWeakMessage'
virtual int ByteSize() const = 0;
^
external/com_google_protobuf/src/google/protobuf/implicit_weak_message.cc:47:31: error: no template named 'ExplicitlyConstructed' in namespace 'google::protobuf::internal'
::google::protobuf::internal::ExplicitlyConstructed
^
In file included from external/com_google_protobuf/src/google/protobuf/implicit_weak_message.cc:31:
In file included from external/com_google_protobuf/src/google/protobuf/implicit_weak_message.h:35:
/usr/local/include/google/protobuf/arena.h:252:18: error: allocating an object of abstract class type 'google::protobuf::internal::ImplicitWeakMessage'
return new T;
^
external/com_google_protobuf/src/google/protobuf/implicit_weak_message.h:59:19: note: in instantiation of function template specialization 'google::protobuf::Arena::CreateMessagegoogle::protobuf::internal::ImplicitWeakMessage' requested here
return Arena::CreateMessage(arena);
^
3 errors generated.
INFO: Elapsed time: 4.549s, Critical Path: 0.81s
INFO: 1 process: 1 local.
FAILED: Build did NOT complete successfully

Originally, I created the same ticket inside Magenta project but then I got a suggestion to post it here. The issue link:
https://github.com/tensorflow/magenta/issues/1341

Unfortunately, I don't know which version of protobuf is used in Magenta.

c++
Source
picture oshyshkin

Most helpful comment

I think the problem is that some older protobuf headers from /usr/local/include are getting mixed with the newer code in your Bazel workspace. Could you try removing or uninstalling those protobuf headers in /usr/local/include?

picture acozzette on 9 Nov 2018
👍5 🎉1

All 3 comments

I think the problem is that some older protobuf headers from /usr/local/include are getting mixed with the newer code in your Bazel workspace. Could you try removing or uninstalling those protobuf headers in /usr/local/include?

acozzette picture acozzette on 9 Nov 2018
👍5 🎉1

Well, something strange happened. I just tried to re-run the bazel command to see a difference but instead of errors I wrote above I got the next one:

ERROR: /private/var/tmp/_bazel_admin/1176f1bbe090aa2200898e6d3db6281e/external/com_google_protobuf/BUILD:105:1: undeclared inclusion(s) in rule '@com_google_protobuf//:protobuf':
this rule is missing dependency declarations for the following files included by 'external/com_google_protobuf/src/google/protobuf/util/internal/json_escaping.cc':
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'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_errno_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_fd_def.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_fd_setsize.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_fd_set.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_fd_clr.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_fd_zero.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_fd_isset.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_fd_copy.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_pthread/_pthread_cond_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_pthread/_pthread_condattr_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_pthread/_pthread_mutex_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_pthread/_pthread_mutexattr_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_pthread/_pthread_once_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_pthread/_pthread_rwlock_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_pthread/_pthread_rwlockattr_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_pthread/_pthread_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_pthread/_pthread_key_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_fsblkcnt_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_fsfilcnt_t.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/syslimits.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/machine/param.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/i386/param.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/i386/_param.h'
'/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/limits.h'
'/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/10.0.0/include/limits.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/limits.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/machine/limits.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/i386/limits.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/i386/_limits.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libkern/OSByteOrder.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libkern/i386/OSByteOrder.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/sys/_types/_os_inline.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/TargetConditionals.h'
'/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/stddef.h'
'/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/unordered_map'
'/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__hash_table'
'/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/cmath'
'/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/math.h'
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/math.h'
'/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/functional'
'/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/unordered_set'

I tried to re-install Xcode but it didn't help. Xcode version: 10.1

oshyshkin picture oshyshkin on 11 Nov 2018

run this command inside your angular project to solve this problem.
yarn run bazel clean --expunge
reference: https://zpjiang.me/2019/03/23/bazel-unknown-argument-fno-canonical-system-headers/

shedinnmarble picture shedinnmarble on 23 Oct 2019
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