A Jetbrains IDE offers an embedded terminal which I use quite often. If I enable syntax-highlighting and use the arrow keys to navigate, the cursor disappears and will only be visible when it blinks/flashes.
I don't know if this is an error of prezto (because it does work perfectly without the embedded terminal) or from Jetbrains - I guess Jetbrains.
I'm trying to find help to isolate the problem to raise an issue within the Jetbrains Bugtracker.

I also asked on Stackoverflow but anybody has replied yet.
Do you have any configuration of this module in your zpreztorc? I've seen in a few other places that sometimes adding the "cursor" highlighter can cause issues like this.
I did not make any configuration besides uncommenting the available options like brackets, pattern (...). I also enabled a few modules like git and syntax-highlighting:
from .zpreztorc
zstyle ':prezto:load' pmodule \
'environment' \
'terminal' \
'editor' \
'history' \
'directory' \
'spectrum' \
'utility' \
'completion' \
'git' \
'syntax-highlighting' \ <--
'prompt'
and within the # Syntax Highlighting config area:
zstyle ':prezto:module:syntax-highlighting' highlighters \
'main' \
'brackets' \
'pattern' \
'line' \
'cursor' \
'root'
That's it..
Do you still see this issue if you disable the cursor highlighter? By default only the main highlighter is active... and I've seen a number of issues filed against the syntax highlighting module which seem similar to what you're seeing.
If you remove the 'cursor' \ line from the syntax highlighting config in your zpreztorc, this will disable the cursor highlighter and may fix this issue.
https://github.com/zsh-users/zsh-syntax-highlighting/blob/master/docs/highlighters.md
https://github.com/zsh-users/zsh-syntax-highlighting/issues/171
Yes, that did work! :) 鉂わ笍
For others, my enabled highlighters:
zstyle ':prezto:module:syntax-highlighting' highlighters \
'main' \
'brackets' \
'pattern' \
'line' \
'root'
I can confirm this worked for me too for the regular terminal emulator cursor.
lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 18.10
Release: 18.10
Codename: cosmic
zsh --version
zsh 5.5.1 (x86_64-ubuntu-linux-gnu)
Most helpful comment
Do you still see this issue if you disable the cursor highlighter? By default only the main highlighter is active... and I've seen a number of issues filed against the syntax highlighting module which seem similar to what you're seeing.
If you remove the
'cursor' \line from the syntax highlighting config in your zpreztorc, this will disable the cursor highlighter and may fix this issue.https://github.com/zsh-users/zsh-syntax-highlighting/blob/master/docs/highlighters.md
https://github.com/zsh-users/zsh-syntax-highlighting/issues/171