Opencv_contrib: sfm dependencies are not found: Glog/Gflags
I am trying to build the sfm module but without success. I have followed the instructions at the README file but no matter what I am doing I am getting the following message all the time (check also below in CMake file):
Module opencv_sfm disabled because the following dependencies are not found: Glog/Gflags
....
....
Unavailable: sfm
System: Archlinux 64bit
Packages Installed:
# pacman -Qs ceres-solver
local/ceres-solver 1.11.0-1 [installed]
Solver for nonlinear least squares problems
# pacman -Qs gflags
local/gflags 2.1.2-2 [installed]
C++ Library for commandline flag processing
local/python2-gflags 2.0-2 [installed]
Commandline flags module for Python
# pacman -Qs google-glog
local/google-glog 0.3.4-2 [installed]
Logging library for C++
CMake file:
$ makepkg -sc
==> Making package: opencv-git 3.1.0.r20.g8d79285-1 (Sat Jan 2 01:40:27 CET 2016)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Retrieving sources...
-> Updating opencv git repo...
Fetching origin
-> Updating opencv_contrib git repo...
Fetching origin
-> Found fsh.patch
==> Validating source files with md5sums...
opencv ... Skipped
opencv_contrib ... Skipped
fsh.patch ... Passed
==> Extracting sources...
-> Creating working copy of opencv git repo...
Reset branch 'makepkg'
-> Creating working copy of opencv_contrib git repo...
Reset branch 'makepkg'
==> Starting pkgver()...
==> Starting prepare()...
patching file CMakeLists.txt
Hunk #1 succeeded at 311 (offset 11 lines).
Hunk #2 succeeded at 353 (offset 11 lines).
Hunk #3 succeeded at 382 (offset 11 lines).
Hunk #4 succeeded at 393 (offset 11 lines).
patching file cmake/templates/opencv_run_all_tests_unix.sh.in
Hunk #1 succeeded at 53 with fuzz 2.
==> Removing existing $pkgdir/ directory...
==> Starting build()...
-- Detected version of GNU GCC: 53 (503)
-- Found ZLIB: /lib64/libz.so (found suitable version "1.2.8", minimum required is "1.2.3")
-- Found ZLIB: /lib64/libz.so (found version "1.2.8")
-- Found OpenEXR: /lib64/libIlmImf.so
-- Checking for module 'libunicap'
-- Package 'libunicap' not found
-- Checking for module 'libucil'
-- Package 'libucil' not found
-- Looking for linux/videodev.h
-- Looking for linux/videodev.h - not found
-- Looking for linux/videodev2.h
-- Looking for linux/videodev2.h - found
-- Looking for sys/videoio.h
-- Looking for sys/videoio.h - not found
WARNING, OpenNI library directory (set by OPENNI_LIB_DIR variable) is not found or does not have OpenNI libraries.
WARNING, OpenNI include directory (set by OPENNI_INCLUDE_DIR variable) is not found or does not have OpenNI include files.
WARNING, PrimeSensor Module binaries directory (set by OPENNI_PRIME_SENSOR_MODULE_BIN_DIR variable) is not found or does not have PrimeSensor Module binaries.
-- Looking for libavformat/avformat.h
-- Looking for libavformat/avformat.h - found
-- Looking for ffmpeg/avformat.h
-- Looking for ffmpeg/avformat.h - not found
-- Checking for module 'tbb'
-- Package 'tbb' not found
-- found IPP (ICV version): 9.0.1 [9.0.1]
-- at: /home/theodore/package_builds/opencv-git/src/opencv/3rdparty/ippicv/unpack/ippicv_lnx
-- CUDA detected: 7.5
-- CUDA NVCC target flags: -gencode;arch=compute_20,code=sm_20;-gencode;arch=compute_20,code=sm_21;-gencode;arch=compute_30,code=sm_30;-gencode;arch=compute_35,code=sm_35;-gencode;arch=compute_30,code=compute_30
-- To enable PlantUML support, set PLANTUML_JAR environment variable or pass -DPLANTUML_JAR=<filepath> option to cmake
-- Found PythonInterp: /usr/bin/python2.7 (found suitable version "2.7.11", minimum required is "2.7")
-- Found PythonLibs: /lib64/libpython2.7.so (found suitable exact version "2.7.11")
-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.5.1", minimum required is "3.4")
-- Found PythonLibs: /lib64/libpython3.5m.so (found suitable exact version "3.5.1")
-- Found apache ant 1.9.6: /bin/ant
-- Found VTK ver. 6.3.0 (usefile: /usr/lib/cmake/vtk-6.3/UseVTK.cmake)
-- Caffe: NO
-- Protobuf: YES
-- Glog: YES
-- HDF5: YES
-- Found required Ceres dependency: Eigen version 3.2.7 in /usr/include/eigen3
-- Found required Ceres dependency: Glog in /usr/include
-- Ceres version 1.11.0 detected here: /usr was built with C++11. Ceres target will add C++11 flags to compile options for targets using it.
-- Found Ceres version: 1.11.0 installed in: /usr
-- Module opencv_sfm disabled because the following dependencies are not found: Glog/Gflags
-- Tesseract: YES
-- HDF5: YES
-- The protocol buffer compiler and libprotobuf were found
-- Tesseract: YES
--
-- General configuration for OpenCV 3.1.0-dev =====================================
-- Version control: 3.1.0-20-g8d79285-dirty
--
-- Platform:
-- Host: Linux 4.3.3-2-ARCH x86_64
-- CMake: 3.4.1
-- CMake generator: Unix Makefiles
-- CMake build tool: /usr/bin/make
-- Configuration: Release
--
-- C/C++:
-- Built as dynamic libs?: YES
-- C++ Compiler: /usr/bin/c++ (ver 5.3.0)
-- C++ flags (Release): -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -msse -msse2 -mno-avx -mno-sse3 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -ffunction-sections -fvisibility=hidden -fvisibility-inlines-hidden -O3 -DNDEBUG -DNDEBUG
-- C++ flags (Debug): -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -msse -msse2 -mno-avx -mno-sse3 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -ffunction-sections -fvisibility=hidden -fvisibility-inlines-hidden -g -O0 -DDEBUG -D_DEBUG
-- C Compiler: /usr/bin/cc
-- C flags (Release): -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wno-narrowing -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -msse -msse2 -mno-avx -mno-sse3 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -ffunction-sections -fvisibility=hidden -O3 -DNDEBUG -DNDEBUG
-- C flags (Debug): -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wno-narrowing -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -msse -msse2 -mno-avx -mno-sse3 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -ffunction-sections -fvisibility=hidden -g -O0 -DDEBUG -D_DEBUG
-- Linker flags (Release): -Wl,-O1,--sort-common,--as-needed,-z,relro
-- Linker flags (Debug): -Wl,-O1,--sort-common,--as-needed,-z,relro
-- Precompiled headers: YES
-- Extra dependencies: Qt5::Test Qt5::Concurrent Qt5::OpenGL /lib64/libwebp.so /lib64/libpng.so /lib64/libtiff.so /lib64/libjasper.so /lib64/libjpeg.so /lib64/libImath.so /lib64/libIlmImf.so /lib64/libIex.so /lib64/libHalf.so /lib64/libIlmThread.so gstvideo-1.0 gstapp-1.0 gstbase-1.0 gstriff-1.0 gstpbutils-1.0 gstreamer-1.0 gobject-2.0 glib-2.0 dc1394 xine avcodec avformat avutil swscale avresample gphoto2 gphoto2_port exif /lib64/libbz2.so Qt5::Core Qt5::Gui Qt5::Widgets /lib64/libhdf5_hl.so /lib64/libhdf5.so /lib64/libpthread.so /lib64/libz.so /lib64/libdl.so /lib64/libm.so vtkRenderingOpenGL vtkImagingHybrid vtkIOImage vtkCommonDataModel vtkCommonMath vtkCommonCore vtksys vtkCommonMisc vtkCommonSystem vtkCommonTransforms vtkCommonExecutionModel vtkDICOMParser vtkIOCore /usr/lib64/libz.so vtkmetaio /usr/lib64/libjpeg.so /usr/lib64/libpng.so /usr/lib64/libtiff.so vtkImagingCore vtkRenderingCore vtkCommonColor vtkFiltersExtraction vtkFiltersCore vtkFiltersGeneral vtkCommonComputationalGeometry vtkFiltersStatistics vtkImagingFourier vtkalglib vtkFiltersGeometry vtkFiltersSources vtkInteractionStyle vtkRenderingLOD vtkFiltersModeling vtkIOPLY vtkIOGeometry vtkFiltersTexture vtkRenderingFreeType /usr/lib64/libfreetype.so vtkftgl vtkIOExport vtkRenderingAnnotation vtkImagingColor vtkRenderingContext2D vtkRenderingGL2PS vtkRenderingContextOpenGL /usr/lib64/libgl2ps.so vtkRenderingLabel /lib64/libtesseract.so /lib64/liblept.so dl m pthread rt /lib64/libGLU.so /lib64/libGL.so tbb cudart nppc nppi npps cufft -L/opt/cuda/lib64
-- 3rdparty dependencies:
--
-- OpenCV modules:
-- To be built: cudev core cudaarithm flann hdf imgproc ml reg surface_matching video viz cudabgsegm cudafilters cudaimgproc cudawarping dnn fuzzy imgcodecs photo shape videoio cudacodec highgui objdetect plot ts xobjdetect xphoto bgsegm bioinspired dpm face features2d line_descriptor saliency text calib3d ccalib cudafeatures2d cudalegacy cudaobjdetect cudaoptflow cudastereo cvv datasets java rgbd stereo structured_light superres tracking videostab xfeatures2d ximgproc aruco optflow stitching matlab python2 python3
-- Disabled: world contrib_world
-- Disabled by dependency: -
-- Unavailable: sfm
--
-- GUI:
-- QT 5.x: YES (ver 5.5.1)
-- QT OpenGL support: YES (Qt5::OpenGL 5.5.1)
-- OpenGL support: YES (/lib64/libGLU.so /lib64/libGL.so)
-- VTK support: YES (ver 6.3.0)
--
-- Media I/O:
-- ZLib: /lib64/libz.so (ver 1.2.8)
-- JPEG: /lib64/libjpeg.so (ver )
-- WEBP: /lib64/libwebp.so (ver encoder: 0x0209)
-- PNG: /lib64/libpng.so (ver 1.6.20)
-- TIFF: /lib64/libtiff.so (ver 42 - 4.0.6)
-- JPEG 2000: /lib64/libjasper.so (ver 1.900.1)
-- OpenEXR: /lib64/libImath.so /lib64/libIlmImf.so /lib64/libIex.so /lib64/libHalf.so /lib64/libIlmThread.so (ver 2.2.0)
-- GDAL: NO
--
-- Video I/O:
-- DC1394 1.x: NO
-- DC1394 2.x: YES (ver 2.2.3)
-- FFMPEG: YES
-- codec: YES (ver 56.60.100)
-- format: YES (ver 56.40.101)
-- util: YES (ver 54.31.100)
-- swscale: YES (ver 3.1.101)
-- resample: YES (ver 2.1.0)
-- gentoo-style: YES
-- GStreamer:
-- base: YES (ver 1.6.2)
-- video: YES (ver 1.6.2)
-- app: YES (ver 1.6.2)
-- riff: YES (ver 1.6.2)
-- pbutils: YES (ver 1.6.2)
-- OpenNI: NO
-- OpenNI PrimeSensor Modules: NO
-- OpenNI2: NO
-- PvAPI: NO
-- GigEVisionSDK: NO
-- UniCap: NO
-- UniCap ucil: NO
-- V4L/V4L2: NO/YES
-- XIMEA: NO
-- Xine: YES (ver 1.2.6)
-- gPhoto2: YES
--
-- Parallel framework: TBB (ver 4.4 interface 9002)
--
-- Other third-party libraries:
-- Use IPP: 9.0.1 [9.0.1]
-- at: /home/theodore/package_builds/opencv-git/src/opencv/3rdparty/ippicv/unpack/ippicv_lnx
-- Use IPP Async: NO
-- Use VA: NO
-- Use Intel VA-API/OpenCL: NO
-- Use Eigen: YES (ver 3.2.7)
-- Use Cuda: YES (ver 7.5)
-- Use OpenCL: YES
-- Use custom HAL: NO
--
-- NVIDIA CUDA
-- Use CUFFT: YES
-- Use CUBLAS: NO
-- USE NVCUVID: NO
-- NVIDIA GPU arch: 20 21 30 35
-- NVIDIA PTX archs: 30
-- Use fast math: NO
--
-- OpenCL:
-- Version: dynamic
-- Include path: /home/theodore/package_builds/opencv-git/src/opencv/3rdparty/include/opencl/1.2
-- Use AMDFFT: NO
-- Use AMDBLAS: NO
--
-- Python 2:
-- Interpreter: /usr/bin/python2.7 (ver 2.7.11)
-- Libraries: /lib64/libpython2.7.so (ver 2.7.11)
-- numpy: /usr/lib/python2.7/site-packages/numpy/core/include (ver 1.10.2)
-- packages path: lib/python2.7/site-packages
--
-- Python 3:
-- Interpreter: /usr/bin/python3 (ver 3.5.1)
-- Libraries: /lib64/libpython3.5m.so (ver 3.5.1)
-- numpy: /usr/lib/python3.5/site-packages/numpy/core/include (ver 1.10.2)
-- packages path: lib/python3.5/site-packages
--
-- Python (for build): /usr/bin/python2.7
--
-- Java:
-- ant: /bin/ant (ver 1.9.6)
-- JNI: /usr/lib/jvm/default/include /usr/lib/jvm/default/include/linux /usr/lib/jvm/default/include
-- Java wrappers: YES
-- Java tests: YES
--
-- Matlab:
-- mex: /home/theodore/matlab/r2015b/bin/mex
-- Compiler/generator: Working
--
-- Documentation:
-- Doxygen: /usr/bin/doxygen (ver 1.8.10)
-- PlantUML: NO
--
-- Tests and samples:
-- Tests: YES
-- Performance tests: YES
-- C/C++ Examples: YES
--
-- Install path: /usr
--
-- cvconfig.h is in: /home/theodore/package_builds/opencv-git/src/opencv
-- -----------------------------------------------------------------
--
CMake Warning at CMakeLists.txt:1250 (message):
The source directory is the same as binary directory. "make clean" may
damage the source tree
-- Configuring done
I tried also to set manually the paths through CMake but still no success:
-D GFLAGS_INCLUDE_DIRS=/usr/include/gflags -D GFLAGS_LIBRARIES=/usr/lib/libgflags.so'
I was not sure if it is related with #485 so I opened a new issue.
ttsesm
All 20 comments
0) There are some problems with the PKGBUILD script =(
1) Try to undef cmake -U SFM_DEPS_OK . parameter.
2) Try to force cmake -DSFM_DEPS_OK=ON . parameter to bypass this check.
alalek
on 2 Jan 2016
👍2
using the above settings in cmake gives the following error:
[ 24%] Built target opencv_core
[ 24%] Building CXX object modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/homography.cc.o
In file included from /usr/include/ceres/types.h:42:0,
from /usr/include/ceres/internal/variadic_evaluate.h:38,
from /usr/include/ceres/internal/autodiff.h:148,
from /usr/include/ceres/autodiff_cost_function.h:132,
from /usr/include/ceres/ceres.h:37,
from /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_light/libmv/multiview/fundamental.cc:24:
/usr/include/ceres/internal/port.h:50:12: error: ‘std::shared_ptr’ has not been declared
using std::shared_ptr;
^
In file included from /usr/include/ceres/ceres.h:55:0,
from /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_light/libmv/multiview/fundamental.cc:24:
/usr/include/ceres/solver.h:499:5: error: ‘shared_ptr’ does not name a type
shared_ptr<ParameterBlockOrdering> linear_solver_ordering;
^
/usr/include/ceres/solver.h:630:5: error: ‘shared_ptr’ does not name a type
shared_ptr<ParameterBlockOrdering> inner_iteration_ordering;
^
In file included from /usr/include/ceres/types.h:42:0,
from /usr/include/ceres/internal/variadic_evaluate.h:38,
from /usr/include/ceres/internal/autodiff.h:148,
from /usr/include/ceres/autodiff_cost_function.h:132,
from /usr/include/ceres/ceres.h:37,
from /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_light/libmv/multiview/homography.cc:24:
/usr/include/ceres/internal/port.h:50:12: error: ‘std::shared_ptr’ has not been declared
using std::shared_ptr;
^
In file included from /usr/include/ceres/ceres.h:55:0,
from /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_light/libmv/multiview/homography.cc:24:
/usr/include/ceres/solver.h:499:5: error: ‘shared_ptr’ does not name a type
shared_ptr<ParameterBlockOrdering> linear_solver_ordering;
^
/usr/include/ceres/solver.h:630:5: error: ‘shared_ptr’ does not name a type
shared_ptr<ParameterBlockOrdering> inner_iteration_ordering;
^
modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/build.make:158: recipe for target 'modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/homography.cc.o' failed
make[2]: *** [modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/homography.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
[ 24%] Linking CXX shared library ../../lib/libopencv_imgproc.so
[ 25%] Built target opencv_imgproc
[ 25%] Building NVCC (Device) object modules/cudaarithm/CMakeFiles/cuda_compile.dir/src/cuda/cuda_compile_generated_cmp_mat.cu.o
modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/build.make:110: recipe for target 'modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/fundamental.cc.o' failed
make[2]: *** [modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/fundamental.cc.o] Error 1
[ 25%] Building NVCC (Device) object modules/cudaarithm/CMakeFiles/cuda_compile.dir/src/cuda/cuda_compile_generated_minmax_mat.cu.o
CMakeFiles/Makefile2:26073: recipe for target 'modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/all' failed
make[1]: *** [modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/all] Error 2
1) Run make and wait for failure.
2) Run make VERBOSE=1 and add output here.
alalek
on 2 Jan 2016
Google points to this discussion about invalid "config.h"
Try to check what config.h is used (for example, run GCC preprocessor via -E option).
It is important, because compilation is broken in this code block in your case:
https://github.com/ceres-solver/ceres-solver/blob/d80c112168acee98c3679918f3d84cfd4f31a947/include/ceres/internal/port.h#L35-L50
alalek
on 2 Jan 2016
[ 84%] Built target opencv_test_optflow
make -f modules/sfm/src/libmv_light/libmv/numeric/CMakeFiles/numeric.dir/build.make modules/sfm/src/libmv_light/libmv/numeric/CMakeFiles/numeric.dir/depend
make[2]: Entering directory '/home/theodore/package_builds/opencv-git/src/opencv'
cd /home/theodore/package_builds/opencv-git/src/opencv && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/theodore/package_builds/opencv-git/src/opencv /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_light/libmv/numeric /home/theodore/package_builds/opencv-git/src/opencv /home/theodore/package_builds/opencv-git/src/opencv/modules/sfm/src/libmv_light/libmv/numeric /home/theodore/package_builds/opencv-git/src/opencv/modules/sfm/src/libmv_light/libmv/numeric/CMakeFiles/numeric.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/home/theodore/package_builds/opencv-git/src/opencv'
make -f modules/sfm/src/libmv_light/libmv/numeric/CMakeFiles/numeric.dir/build.make modules/sfm/src/libmv_light/libmv/numeric/CMakeFiles/numeric.dir/build
make[2]: Entering directory '/home/theodore/package_builds/opencv-git/src/opencv'
make[2]: Nothing to be done for 'modules/sfm/src/libmv_light/libmv/numeric/CMakeFiles/numeric.dir/build'.
make[2]: Leaving directory '/home/theodore/package_builds/opencv-git/src/opencv'
[ 84%] Built target numeric
make -f modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/build.make modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/depend
make[2]: Entering directory '/home/theodore/package_builds/opencv-git/src/opencv'
cd /home/theodore/package_builds/opencv-git/src/opencv && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/theodore/package_builds/opencv-git/src/opencv /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_light/libmv/multiview /home/theodore/package_builds/opencv-git/src/opencv /home/theodore/package_builds/opencv-git/src/opencv/modules/sfm/src/libmv_light/libmv/multiview /home/theodore/package_builds/opencv-git/src/opencv/modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/home/theodore/package_builds/opencv-git/src/opencv'
make -f modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/build.make modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/build
make[2]: Entering directory '/home/theodore/package_builds/opencv-git/src/opencv'
[ 84%] Building CXX object modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/fundamental.cc.o
cd /home/theodore/package_builds/opencv-git/src/opencv/modules/sfm/src/libmv_light/libmv/multiview && /usr/bin/c++ -DCERES_FOUND=1 -D__OPENCV_BUILD=1 -I/home/theodore/package_builds/opencv-git/src/opencv/include/opencv -I/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_light -I/home/theodore/package_builds/opencv-git/src/opencv/3rdparty/ippicv/unpack/ippicv_lnx/include -I/home/theodore/package_builds/opencv-git/src/opencv -isystem /usr/include/eigen3 -I/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/include -I/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src -I/home/theodore/package_builds/opencv-git/src/opencv/modules/sfm -I/home/theodore/package_builds/opencv-git/src/opencv/modules/cudev/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/core/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/cudaarithm/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/flann/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/imgproc/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/ml/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/video/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/imgcodecs/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/shape/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/videoio/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/highgui/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/features2d/include -I/home/theodore/package_builds/opencv-git/src/opencv/modules/calib3d/include -I/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/xfeatures2d/include -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Winit-self -Wpointer-arith -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -msse -msse2 -mno-avx -mno-sse3 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -ffunction-sections -fvisibility=hidden -fvisibility-inlines-hidden -Wno-undef -Wno-shadow -Wno-sign-compare -Wno-missing-declarations -Wno-unused-but-set-variable -Wno-unused-parameter -Wno-unused-function -fPIC -O3 -DNDEBUG -DNDEBUG -o CMakeFiles/multiview.dir/fundamental.cc.o -c /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_light/libmv/multiview/fundamental.cc
In file included from /usr/include/ceres/types.h:42:0,
from /usr/include/ceres/internal/variadic_evaluate.h:38,
from /usr/include/ceres/internal/autodiff.h:148,
from /usr/include/ceres/autodiff_cost_function.h:132,
from /usr/include/ceres/ceres.h:37,
from /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_light/libmv/multiview/fundamental.cc:24:
/usr/include/ceres/internal/port.h:50:12: error: ‘std::shared_ptr’ has not been declared
using std::shared_ptr;
^
In file included from /usr/include/ceres/ceres.h:55:0,
from /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_light/libmv/multiview/fundamental.cc:24:
/usr/include/ceres/solver.h:499:5: error: ‘shared_ptr’ does not name a type
shared_ptr<ParameterBlockOrdering> linear_solver_ordering;
^
/usr/include/ceres/solver.h:630:5: error: ‘shared_ptr’ does not name a type
shared_ptr<ParameterBlockOrdering> inner_iteration_ordering;
^
modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/build.make:110: recipe for target 'modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/fundamental.cc.o' failed
make[2]: *** [modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/fundamental.cc.o] Error 1
make[2]: Leaving directory '/home/theodore/package_builds/opencv-git/src/opencv'
CMakeFiles/Makefile2:26073: recipe for target 'modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/all' failed
make[1]: *** [modules/sfm/src/libmv_light/libmv/multiview/CMakeFiles/multiview.dir/all] Error 2
make[1]: Leaving directory '/home/theodore/package_builds/opencv-git/src/opencv'
Makefile:160: recipe for target 'all' failed
make: *** [all] Error 2
that's the output from make VERBOSE=1. However, I did not get the thing with the config.h and the gcc preprocessor via -E option can you explain a bit more.
ttsesm
on 2 Jan 2016
Please attach your /usr/include/ceres/internal/config.h
Do you have something like this?
$ cat /usr/include/ceres/internal/config.h | grep TR1
// #define CERES_STD_UNORDERED_MAP_IN_TR1_NAMESPACE
#define CERES_TR1_UNORDERED_MAP
#define CERES_TR1_MEMORY_HEADER
#define CERES_TR1_SHARED_PTR
Or you have this?
alalek
on 2 Jan 2016
Hi Alexander, the content of config.h is a bit different than the one that you describe above, all the lines are commented:
cat /usr/include/ceres/internal/config.h | grep TR1
// #define CERES_STD_UNORDERED_MAP_IN_TR1_NAMESPACE
// #define CERES_TR1_UNORDERED_MAP
// #define CERES_TR1_MEMORY_HEADER
// #define CERES_TR1_SHARED_PTR
and for sure not the one from the link, check bellow:
// Ceres Solver - A fast non-linear least squares minimizer
// Copyright 2015 Google Inc. All rights reserved.
// http://ceres-solver.org/
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright notice,
// this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright notice,
// this list of conditions and the following disclaimer in the documentation
// and/or other materials provided with the distribution.
// * Neither the name of Google Inc. nor the names of its contributors may be
// used to endorse or promote products derived from this software without
// specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
// LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
// CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
// SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
// INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
// CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
// ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
// POSSIBILITY OF SUCH DAMAGE.
//
// Author: [email protected] (Alex Stewart)
// Configuration options for Ceres.
//
// Do not edit this file, it was automatically configured by CMake when
// Ceres was compiled with the relevant configuration for the machine
// on which Ceres was compiled.
//
// Ceres Developers: All options should have the same name as their mapped
// CMake options, in the preconfigured version of this file
// all options should be enclosed in '@'.
#ifndef CERES_PUBLIC_INTERNAL_CONFIG_H_
#define CERES_PUBLIC_INTERNAL_CONFIG_H_
// If defined, use the LGPL code in Eigen.
#define CERES_USE_EIGEN_SPARSE
// If defined, Ceres was compiled without LAPACK.
// #define CERES_NO_LAPACK
// If defined, Ceres was compiled without SuiteSparse.
// #define CERES_NO_SUITESPARSE
// If defined, Ceres was compiled without CXSparse.
// #define CERES_NO_CXSPARSE
// If defined, Ceres was compiled without Schur specializations.
// #define CERES_RESTRICT_SCHUR_SPECIALIZATION
// If defined, Ceres was compiled to use Eigen instead of hardcoded BLAS
// routines.
// #define CERES_NO_CUSTOM_BLAS
// If defined, Ceres was compiled with C++11.
#define CERES_USE_CXX11
// If defined, Ceres was compiled without multithreading support.
// #define CERES_NO_THREADS
// If defined Ceres was compiled with OpenMP multithreading support.
#define CERES_USE_OPENMP
// Additionally defined on *nix if Ceres was compiled with OpenMP support,
// as in this case pthreads is also required.
#define CERES_HAVE_PTHREAD
#define CERES_HAVE_RWLOCK
// Which version of unordered map was used when Ceres was compiled. Exactly
// one of these will be defined for any given build.
#define CERES_STD_UNORDERED_MAP
// #define CERES_STD_UNORDERED_MAP_IN_TR1_NAMESPACE
// #define CERES_TR1_UNORDERED_MAP
// #define CERES_NO_UNORDERED_MAP
// If defined, the memory header is in <tr1/memory>, otherwise <memory>.
// #define CERES_TR1_MEMORY_HEADER
// If defined shared_ptr is in std::tr1 namespace, otherwise std.
// #define CERES_TR1_SHARED_PTR
// If defined, Ceres was built as a shared library.
// #define CERES_USING_SHARED_LIBRARY
#endif // CERES_PUBLIC_INTERNAL_CONFIG_H_
so I guess the issue is that I did not compiled ceres_solver with the proper options, right? Actually I used this PKGBUILD file from here
ttsesm
on 2 Jan 2016
Thanks for update!
I see, there is defined #define CERES_USE_CXX11 in your ceres config. You may try to disable C++11 in ceres build somehow or enable C++11 features in OpenCV build (rebuild with cmake -DCMAKE_CXX_FLAGS="-std=c++11 .). But this mode is not well tested (especially with opencv_contrib).
alalek
on 3 Jan 2016
Hi Alexander, I followed your advice and disabled c++11 on ceres_solver package and now the content of config.h in ceres_solver is the one you mentioned above in your message:
$ cat /usr/include/ceres/internal/config.h | grep TR1
// #define CERES_STD_UNORDERED_MAP_IN_TR1_NAMESPACE
#define CERES_TR1_UNORDERED_MAP
#define CERES_TR1_MEMORY_HEADER
#define CERES_TR1_SHARED_PTR
Then I tried to recompile opencv, however now I am getting the following error:
[ 58%] Building CXX object modules/sfm/CMakeFiles/opencv_sfm.dir/src/simple_pipeline.cpp.o
In file included from /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/simple_pipeline.cpp:43:0:
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h: In function ‘void libmv_initLogging(const char*)’:
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:94:42: error: ‘SetCommandLineOption’ was not declared in this scope
SetCommandLineOption("logtostderr", "1");
^
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h: In function ‘void libmv_startDebugLogging()’:
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:101:42: error: ‘SetCommandLineOption’ was not declared in this scope
SetCommandLineOption("logtostderr", "1");
^
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h: In function ‘void libmv_setLoggingVerbosity(int)’:
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:110:32: error: ‘SetCommandLineOption’ was not declared in this scope
SetCommandLineOption("v", val);
^
modules/sfm/CMakeFiles/opencv_sfm.dir/build.make:206: recipe for target 'modules/sfm/CMakeFiles/opencv_sfm.dir/src/simple_pipeline.cpp.o' failed
make[2]: *** [modules/sfm/CMakeFiles/opencv_sfm.dir/src/simple_pipeline.cpp.o] Error 1
CMakeFiles/Makefile2:25694: recipe for target 'modules/sfm/CMakeFiles/opencv_sfm.dir/all' failed
make[1]: *** [modules/sfm/CMakeFiles/opencv_sfm.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
any idea?
ttsesm
on 3 Jan 2016
Check this patch: #484
alalek
on 3 Jan 2016
I checked the source file and it is already patched, but compilation still fails.
ttsesm
on 3 Jan 2016
Try to replace to something like GFLAGS_NAMESPACE::SetCommandLineOption.
See https://github.com/gflags/gflags/search?utf8=%E2%9C%93&q=SetCommandLineOption
alalek
on 4 Jan 2016
nope it does not work it gives me the following:
In file included from /home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/simple_pipeline.cpp:43:0:
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h: In function ‘void libmv_initLogging(const char*)’:
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:94:3: error: ‘GFLAGS_NAMESPACE’ has not been declared
GFLAGS_NAMESPACE::SetCommandLineOption("logtostderr", "1");
^
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:95:3: error: ‘GFLAGS_NAMESPACE’ has not been declared
GFLAGS_NAMESPACE::SetCommandLineOption("v", "0");
^
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:96:3: error: ‘GFLAGS_NAMESPACE’ has not been declared
GFLAGS_NAMESPACE::SetCommandLineOption("stderrthreshold", severity_fatal);
^
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:97:3: error: ‘GFLAGS_NAMESPACE’ has not been declared
GFLAGS_NAMESPACE::SetCommandLineOption("minloglevel", severity_fatal);
^
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h: In function ‘void libmv_startDebugLogging()’:
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:101:3: error: ‘GFLAGS_NAMESPACE’ has not been declared
GFLAGS_NAMESPACE::SetCommandLineOption("logtostderr", "1");
^
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:102:3: error: ‘GFLAGS_NAMESPACE’ has not been declared
GFLAGS_NAMESPACE::SetCommandLineOption("v", "2");
^
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:103:3: error: ‘GFLAGS_NAMESPACE’ has not been declared
GFLAGS_NAMESPACE::SetCommandLineOption("stderrthreshold", "1");
^
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:104:3: error: ‘GFLAGS_NAMESPACE’ has not been declared
GFLAGS_NAMESPACE::SetCommandLineOption("minloglevel", "0");
^
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h: In function ‘void libmv_setLoggingVerbosity(int)’:
/home/theodore/package_builds/opencv-git/src/opencv_contrib/modules/sfm/src/libmv_capi.h:110:3: error: ‘GFLAGS_NAMESPACE’ has not been declared
GFLAGS_NAMESPACE::SetCommandLineOption("v", val);
^
modules/sfm/CMakeFiles/opencv_sfm.dir/build.make:206: recipe for target 'modules/sfm/CMakeFiles/opencv_sfm.dir/src/simple_pipeline.cpp.o' failed
make[2]: *** [modules/sfm/CMakeFiles/opencv_sfm.dir/src/simple_pipeline.cpp.o] Error 1
CMakeFiles/Makefile2:25694: recipe for target 'modules/sfm/CMakeFiles/opencv_sfm.dir/all' failed
make[1]: *** [modules/sfm/CMakeFiles/opencv_sfm.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 64%] Built target example_tapi_camshift
then I tried to include some header files but no success as well
ttsesm
on 4 Jan 2016
@TheodoreT ,
- Does this help: https://github.com/Itseez/opencv_contrib/pull/484/files (already merged).
cbalint13
on 4 Jan 2016
@cbalint13 nope, I have already this patch, Alexander pointed me to that earlier, but it does not help. I tried also to use the former status before the patch with the google:: namespace but without success as well.
ttsesm
on 4 Jan 2016
Same problem here
I added '-D CMAKE_CXX_FLAGS=-std=c++11' to PKGBUILD file, that solved the std::shared_ptr error.
but the SetCommandLineOption error is still there
comicchang
on 14 Jan 2016
Well,
adding this line
#include <gflags/gflags.h>
to the file opencv_contrib/modules/sfm/src/libmv_capi.h solved my issue
comicchang
on 14 Jan 2016
@comicchang thanks for the update. Indeed your solution solved the issue here as well. I will try to make a pull request with the solution. Many thanks again.
ttsesm
on 14 Jan 2016
@TheodoreT Could you try #519 fix?
alalek
on 19 Jan 2016
@alalek thanks #519 solves the issue I was planning to make a PR, but @volokh was faster. I am glad though that the issue is solved :+1: . Therefore, I will close this issue. Thanks again.
ttsesm
on 19 Jan 2016
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Most helpful comment
0) There are some problems with the PKGBUILD script =(
1) Try to undef
cmake -U SFM_DEPS_OK .parameter.2) Try to force
cmake -DSFM_DEPS_OK=ON .parameter to bypass this check.