I have a GeoJSON feature that isn't rendering properly.
It's a simple MultiPolygon, with three building footprints. I'll copy it in the bottom of this issue.
The issue is that only the first building is 'filled' and the others are outlined only. When extruded, things get weirder.
I've set up a reproducible error here: Link to JSFiddle: https://jsfiddle.net/5bfo9ex9/4/
I've tested the GeoJSON feature in GeoJSON.io and you can view that here: http://bl.ocks.org/d/e7524fe9c7f1b86dd87a7831afb01d08
MapBoxGL version v0.39.1:


{"type":"MultiPolygon","coordinates":[[[[115.813867,-31.932177],[115.813867,-31.932177],[115.813867,-31.932087],[115.813962,-31.932087],[115.813962,-31.932124],[115.814005,-31.932124],[115.814005,-31.932168],[115.813962,-31.932168],[115.813962,-31.932177],[115.813867,-31.932177]],[[115.813962,-31.932087],[115.813894,-31.932087],[115.813894,-31.932042],[115.81391,-31.932042],[115.81391,-31.931967],[115.813984,-31.931967],[115.813984,-31.932042],[115.81401,-31.932042],[115.81401,-31.932087],[115.813962,-31.932087]],[[115.81391,-31.931967],[115.81391,-31.931931],[115.813849,-31.931931],[115.813849,-31.9319],[115.81386,-31.9319],[115.81386,-31.931868],[115.813984,-31.931868],[115.813984,-31.931967],[115.81391,-31.931967]]]]}
The geometry of your MultiPolygon is invalid: it purports to consists of a single Polygon with an outer ring and two inner rings, but the inner rings are not contained within the outer ring. Here's a corrected example, with three simple polygons instead, which is probably what you intended: https://jsfiddle.net/5bfo9ex9/5/
Most helpful comment
The geometry of your MultiPolygon is invalid: it purports to consists of a single Polygon with an outer ring and two inner rings, but the inner rings are not contained within the outer ring. Here's a corrected example, with three simple polygons instead, which is probably what you intended: https://jsfiddle.net/5bfo9ex9/5/