When exporting tracks, all instruments except for the active one get muted. So far soo good. When I put a automation line that mutes and unmutes instruments to create a stutter effect, it gets activated by the automation line when another instrument is active. I found a workaround, which consists of the automation line muting a FX channel that is linked to the instrument.
Open a project with several instruments, and create a automation line that mutes and unmutes an instrument. Then export tracks. Voli谩 there you go.
The currently inactive instrument stays muted
The currently inactive instrument gets unmuted

I tested it in Version 1.2.1 (Linux/x86_64, Qt 5.12.8, GCC 9.3.0), but I suspect all versions where 'export tracks' exists are affected.
I'd like to do this one!
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I'd like to do this one!