Linuxbrew-core: Installing bottled apps written in Rust like lsd or fd fails since patchelf 0.12

[tkaehn]

Bug report

• [x] ran brew update and can still reproduce the problem?
• [x] ran brew doctor, fixed all issues and can still reproduce the problem?
• [ ] ran brew gist-logs <formula> (where <formula> is the name of the formula that failed) and included the output link?
• [x] if brew gist-logs didn't work: ran brew config and brew doctor and included their output with your issue?

What you were trying to do (and why)

$ brew install fd

What happened (include command output)

Failed to install bottle and installing build dependencies from bottle fails, too.

Command output

$ brew install fd

==> Downloading https://linuxbrew.bintray.com/bottles/fd-8.1.1.x86_64_linux.bottle.tar.gz

Already downloaded: /home/tk/.cache/Homebrew/downloads/3445da5e235ec70aa07d98d7ed9ff030eff80d9a8ae7f8bfb65995073c5aa19c--fd-8.1.1.x86_64_linux.bottle.tar.gz

==> Pouring fd-8.1.1.x86_64_linux.bottle.tar.gz

patchelf: cannot normalize PT_NOTE segment: non-contiguous SHT_NOTE sections

Error: Failure while executing; /home/linuxbrew/.linuxbrew/bin/patchelf --set-interpreter /home/linuxbrew/.linuxbrew/lib/ld.so --force-rpath --set-rpath /home/linuxbrew/.linuxbrew/Cellar/fd/8.1.1/lib:/home/linuxbrew/.linuxbrew/lib /home/linuxbrew/.linuxbrew/Cellar/fd/8.1.1/bin/fd exited with 1.

Warning: Bottle installation failed: building from source.

==> Installing dependencies for fd: [email protected], zlib, libssh2, pkg-config, curl, binutils and rust

==> Installing fd dependency: [email protected]

==> Pouring [email protected]_64_linux.bottle.tar.gz

tar: /home/tk/.cache/Homebrew/downloads/4e1927ff86b2ef79cebece52e1ca444bd1a7373e45b521afdebef332cb997a61--openssl@1.1-1.1.1h.x86_64_linux.bottle.tar.gz: Cannot open: No such file or directory

tar: Error is not recoverable: exiting now

Error: Failure while executing; tar xof /home/tk/.cache/Homebrew/downloads/4e1927ff86b2ef79cebece52e1ca444bd1a7373e45b521afdebef332cb997a61--openssl@1.1-1.1.1h.x86_64_linux.bottle.tar.gz -C /tmp/d20201123-21252-qr4tv5 exited with 2. Here's the output:

tar: /home/tk/.cache/Homebrew/downloads/4e1927ff86b2ef79cebece52e1ca444bd1a7373e45b521afdebef332cb997a61--openssl@1.1-1.1.1h.x86_64_linux.bottle.tar.gz: Cannot open: No such file or directory

tar: Error is not recoverable: exiting now


Warning: Bottle installation failed: building from source.

[...]

$ brew config

HOMEBREW_VERSION: 2.5.11-178-g1ba26be

ORIGIN: https://github.com/Homebrew/brew

HEAD: 1ba26be10324f2ca7570dc3cb41dc6ec0244564b

Last commit: 12 hours ago

Core tap ORIGIN: https://github.com/Homebrew/linuxbrew-core

Core tap HEAD: 5acb8228d5b47cae8a770c23397fcdb36edc6bad

Core tap last commit: 10 minutes ago

Core tap branch: master

HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew

HOMEBREW_CASK_OPTS: []

HOMEBREW_DISPLAY: :0

HOMEBREW_MAKE_JOBS: 4

HOMEBREW_NO_ANALYTICS: set

Homebrew Ruby: 2.6.3 => /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.6.3_2/bin/ruby

CPU: quad-core 64-bit skylake

Clang: N/A

Git: 2.20.1 => /usr/bin/git

Curl: 7.64.0 => /usr/bin/curl

Kernel: Linux 4.19.0-12-amd64 x86_64 GNU/Linux

OS: Debian GNU/Linux 10 (buster) (buster)

Host glibc: 2.28

/usr/bin/gcc: 8.3.0

/usr/bin/ruby: 2.5.5

glibc: N/A

gcc: N/A

xorg: N/A

$ brew doctor

Your system is ready to brew.

  

What you expected to happen

Installation completing successfully. Switching back to patchelf 0.11 made it possible to install the bottle above.

Step-by-step reproduction instructions (by running brew install commands)

$ brew install fd

[iMichka]

patchelf: cannot normalize PT_NOTE segment: non-contiguous SHT_NOTE sections
Error: Failure while executing; /home/linuxbrew/.linuxbrew/bin/patchelf --set-interpreter /home/linuxbrew/.linuxbrew/lib/ld.so --force-rpath --set-rpath /home/linuxbrew/.linuxbrew/Cellar/fd/8.1.1/lib:/home/linuxbrew/.linuxbrew/lib /home/linuxbrew/.linuxbrew/Cellar/fd/8.1.1/bin/fd exited with 1

@sjackman another patchelf issue.

[sjackman]

Opened an upstream bug report at https://github.com/NixOS/patchelf/issues/255

[sjackman]

Fortunately, I have a quick and easy work around for you, Thomas!

$ HOMEBREW_PATCHELF_RB_WRITE=1 brew install fd
…
==> Summary
🍺  /home/linuxbrew/.linuxbrew/Cellar/fd/8.1.1: 11 files, 3.2MB

All the thanks for this fix are owed to @rmNULL!

[sjackman]

This issue will be fixed by PR https://github.com/Homebrew/brew/pull/9280.

[tkaehn]

Thank you very much for the workaround!