Linuxbrew-core: Rust: bottled binaries need resetting interpreter when installed in non-standard location

[Char-Aznable]

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• [x] have a problem with brew install (or upgrade, reinstall) a single formula? If it's a general brew problem please file this issue at Linuxbrew/brew: https://github.com/Linuxbrew/brew/issues/new/choose. If it's a tap (e.g. Brewsci/homebrew-bio) problem please file this issue at the tap.
• [x] ran brew update and can still reproduce the problem?
• [x] ran brew doctor, fixed all issues and can still reproduce the problem?
• [ ] ran brew gist-logs <formula> (where <formula> is the name of the formula that failed) and included the output link?
• [ ] if brew gist-logs didn't work: ran brew config and brew doctor and included their output with your issue?

To help us debug your issue please explain:

• What you were trying to do (and why)
  brew install rust --force-bottle

• What happened (include command output)
  Installation is successful but the binaries can't be run because the interpreter path to ld.so is hardcoded to /home/linuxbrew/.linubrew/lib/ld.so

My linuxbrew is installed in ~/.linuxbrew. I can workaround the issue using patchelf --set-interpreter ~/.linuxbrew/opt/rust/bin/rustc for example. Can this be done in the formula when pouring the bottle?

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs.

[iMichka]

Weird. As the bottle is marked as relocatable, your probably do not need the --force-bottle flag. I see that patchelf is indeed run on rustc when the bottle is poured.

I am hitting another error thoug:

==> Finishing up
ln -s ../Cellar/rust/1.32.0/bin/cargo cargo
ln -s ../Cellar/rust/1.32.0/bin/racer racer
ln -s ../Cellar/rust/1.32.0/bin/rust-gdb rust-gdb
ln -s ../Cellar/rust/1.32.0/bin/rust-lldb rust-lldb
ln -s ../Cellar/rust/1.32.0/bin/rustc rustc
ln -s ../Cellar/rust/1.32.0/bin/rustdoc rustdoc
ln -s ../../Cellar/rust/1.32.0/share/doc/rust rust
ln -s ../../../Cellar/rust/1.32.0/share/man/man1/rustc.1 rustc.1
ln -s ../../../Cellar/rust/1.32.0/share/man/man1/rustdoc.1 rustdoc.1
ln -s ../Cellar/rust/1.32.0/share/rust rust
ln -s ../Cellar/rust/1.32.0/lib/libarena-36ec6e0ea3ada185.so libarena-36ec6e0ea3ada185.so
ln -s ../Cellar/rust/1.32.0/lib/libfmt_macros-7663dbafdf452605.so libfmt_macros-7663dbafdf452605.so
ln -s ../Cellar/rust/1.32.0/lib/libgraphviz-d77cc560f970f370.so libgraphviz-d77cc560f970f370.so
ln -s ../Cellar/rust/1.32.0/lib/librustc-d487f79bdc0d476a.so librustc-d487f79bdc0d476a.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_allocator-cff02bbb4551c5d7.so librustc_allocator-cff02bbb4551c5d7.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_borrowck-2d17012447025e7a.so librustc_borrowck-2d17012447025e7a.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_codegen_ssa-ad2f2cf720e0e201.so librustc_codegen_ssa-ad2f2cf720e0e201.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_codegen_utils-d5cc2e039de33fc4.so librustc_codegen_utils-d5cc2e039de33fc4.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_cratesio_shim-9580821ddda02480.so librustc_cratesio_shim-9580821ddda02480.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_data_structures-c02875b23dfb99bd.so librustc_data_structures-c02875b23dfb99bd.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_driver-a68ec961234c2001.so librustc_driver-a68ec961234c2001.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_errors-f9d34ebf3c6d3167.so librustc_errors-f9d34ebf3c6d3167.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_fs_util-b13bcd72094ad2ae.so librustc_fs_util-b13bcd72094ad2ae.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_incremental-8633562df6ca6992.so librustc_incremental-8633562df6ca6992.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_lint-01e5c698edd360b0.so librustc_lint-01e5c698edd360b0.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_metadata-07e7aa24fc1cc3c9.so librustc_metadata-07e7aa24fc1cc3c9.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_mir-764ed89f33f1a669.so librustc_mir-764ed89f33f1a669.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_passes-a87a6dc4c3c522e3.so librustc_passes-a87a6dc4c3c522e3.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_platform_intrinsics-aa5b4fad417979c0.so librustc_platform_intrinsics-aa5b4fad417979c0.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_plugin-aa7b0219f9712806.so librustc_plugin-aa7b0219f9712806.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_privacy-1f903671c3b69e96.so librustc_privacy-1f903671c3b69e96.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_resolve-2b8e3adf3ab53d0e.so librustc_resolve-2b8e3adf3ab53d0e.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_save_analysis-cab8fa5916ca4907.so librustc_save_analysis-cab8fa5916ca4907.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_target-c594bfa5c81bdc25.so librustc_target-c594bfa5c81bdc25.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_traits-d04f06a6dd0904df.so librustc_traits-d04f06a6dd0904df.so
ln -s ../Cellar/rust/1.32.0/lib/librustc_typeck-9b9b471c6e8673e7.so librustc_typeck-9b9b471c6e8673e7.so
ln -s ../Cellar/rust/1.32.0/lib/libserialize-f1e42cfda55ce63e.so libserialize-f1e42cfda55ce63e.so
ln -s ../Cellar/rust/1.32.0/lib/libstd-be3f5b84c0422bf0.so libstd-be3f5b84c0422bf0.so
ln -s ../Cellar/rust/1.32.0/lib/libsyntax-9e0a1f1212139533.so libsyntax-9e0a1f1212139533.so
ln -s ../Cellar/rust/1.32.0/lib/libsyntax_ext-6552f5a34206d28f.so libsyntax_ext-6552f5a34206d28f.so
ln -s ../Cellar/rust/1.32.0/lib/libsyntax_pos-5ff96a3e62b2c0bd.so libsyntax_pos-5ff96a3e62b2c0bd.so
ln -s ../Cellar/rust/1.32.0/lib/libterm-1b83f14125db072d.so libterm-1b83f14125db072d.so
ln -s ../Cellar/rust/1.32.0/lib/libtest-187773f144ed2d0e.so libtest-187773f144ed2d0e.so
ln -s ../Cellar/rust/1.32.0/lib/rustlib rustlib
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/postinstall.rb (Formulary::FromPathLoader): loading /home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/rust.rb
Error: Failure while executing; `readelf -d /home/linuxbrew/.linuxbrew/Cellar/rust/1.32.0/share/rust/rust_src/tools/lldb/unittests/ObjectFile/ELF/Inputs/early-section-headers.so` exited with 1. Here's the output:
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/utils/popen.rb:10:in `safe_popen_read'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/os/linux/elf.rb:136:in `needed_libraries_using_readelf'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/os/linux/elf.rb:111:in `needed_libraries'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/os/linux/elf.rb:87:in `initialize'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/os/linux/elf.rb:152:in `new'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/os/linux/elf.rb:152:in `metadata'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/os/linux/elf.rb:160:in `dynamically_linked_libraries'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/linkage_checker.rb:98:in `block in check_dylibs'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/lib/ruby/2.3.0/pathname.rb:563:in `block in find'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/lib/ruby/2.3.0/find.rb:49:in `block (2 levels) in find'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/lib/ruby/2.3.0/find.rb:48:in `catch'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/lib/ruby/2.3.0/find.rb:48:in `block in find'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/lib/ruby/2.3.0/find.rb:43:in `each'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/lib/ruby/2.3.0/find.rb:43:in `find'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/lib/ruby/2.3.0/pathname.rb:563:in `find'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/lib/ruby/2.3.0/forwardable.rb:202:in `find'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/linkage_checker.rb:91:in `check_dylibs'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/extend/os/linux/linkage_checker.rb:23:in `check_dylibs'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/linkage_checker.rb:25:in `initialize'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula_installer.rb:642:in `new'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula_installer.rb:642:in `block in finish'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/cache_store.rb:15:in `use'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula_installer.rb:639:in `finish'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula_installer.rb:592:in `install_dependency'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula_installer.rb:545:in `block in install_dependencies'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula_installer.rb:545:in `each'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula_installer.rb:545:in `install_dependencies'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula_installer.rb:254:in `install'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/cmd/install.rb:321:in `install_formula'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/cmd/install.rb:253:in `block in install'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/cmd/install.rb:251:in `each'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/cmd/install.rb:251:in `install'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/brew.rb:105:in `<main>'

I am currently investigating this latest issue. It may have something to do with the latest binutils update.

[iMichka]

@sjackman did you ever see this error?

[sjackman]

No, I have never seen this error.

[iMichka]

readelf -d /home/linuxbrew/.linuxbrew/Cellar/rust/1.32.0/share/rust/rust_src/tools/lldb/unittests/ObjectFile/ELF/Inputs/early-section-headers.so
readelf: Warning: possibly corrupt ELF header - it has a non-zero program header offset, but no program headers

That's a test file, which is probably corrupted on purpose.

[iMichka]

I am working on a patch

[jonchang]

I'm seeing this error as well. Let me know if you need me to test anything. Not sure how to fix this.

[iMichka]

Patch is here: https://github.com/Homebrew/brew/pull/5696

I think that it stumbles on the corrupted elf file, and then does not patch the rest of the files. Can you try if it helps?

[jonchang]

@iMichka nope, doesn't seem like it. ldd $(brew --prefix rust)/bin/cargo still fails with /home/jchang/.linuxbrew/bin/ldd: /home/jchang/.linuxbrew/opt/rust/bin/cargo: /home/linuxbrew/.linuxbrew/lib/ld.so: bad ELF interpreter: No such file or directory. I checked the install log and it seems like patchelf worked just fine (or without an error at least)

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs.

[iMichka]

I merged https://github.com/Homebrew/brew/pull/5696. @Char-Aznable can you update, brew uninstall rust and brew install rust again?

[Char-Aznable]

I just tried it with latest bottle 1.33.0 and the problem persists.

[sjackman]

@Char-Aznable Please report brew --version and try brew update.

[Char-Aznable]

$brew --version Homebrew 2.0.3-41-g0f07fe5 Homebrew/linuxbrew-core (git revision f7d0dd; last commit 2019-03-11) $ brew update Already up-to-date.

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs.

[kitaev-chen]

$brew --version
Homebrew 2.0.3-41-g0f07fe5
Homebrew/linuxbrew-core (git revision f7d0dd; last commit 2019-03-11)
$ brew update
Already up-to-date.

how about your result? I think the problem still exists

[iMichka]

I does, as nobody worked on this. Pull requests are welcome though!

[sjackman]

@xu-cheng submitted PR https://github.com/Homebrew/brew/pull/6303 to fix this issue.