Joss-reviews: [PRE REVIEW]: ACHR.cu: GPU sampling of metabolic networks.

[whedon]

Submitting author: @marouenbg (Marouen Ben Guebila)
Repository: https://github.com/marouenbg/ACHR.cu
Version: v0.1
Editor: @lpantano
Reviewers: @wmegchel, @prasunanand

Author instructions

Thanks for submitting your paper to JOSS @marouenbg. Currently, there isn't an JOSS editor assigned to your paper.

@marouenbg if you have any suggestions for potential reviewers then please mention them here in this thread. In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission.

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

[whedon]

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@whedon commands

What happens now?

This submission is currently in a pre-review state which means we are waiting for an editor to be assigned and for them to find some reviewers for your submission. This may take anything between a few hours to a couple of weeks. Thanks for your patience :smile_cat:

You can help the editor by looking at this list of potential reviewers to identify individuals who might be able to review your submission (please start at the bottom of the list). Also, feel free to suggest individuals who are not on this list by mentioning their GitHub handles here.

[arfon]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[marouenbg]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #1302 with the following error:

% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed

0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 13 0 13 0 0 232 0 --:--:-- --:--:-- --:--:-- 236
Error producing PDF.
! Undefined control sequence.
l.376 Model\Cores

Looks like we failed to compile the PDF

[marouenbg]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[kyleniemeyer]

@brainstorm @mgymrek @pjotrp not sure exactly if this one fits in your area, but if so would one of you be able to edit? (or recommend someone else... this is a bit far outside my area of expertise to make a good call)

[pjotrp]

One of our team will take it.

[kyleniemeyer]

thanks @pjotrp!

[lpantano]

Hi @marouenbg,

I will lead the review process of this tool. Thank you for submitting. I am looking for possible reviewers, meanwhile, could you add the DOI links to the reference, please? It has to end up something like this: https://github.com/openjournals/joss-papers/blob/joss.01299/joss.01299/10.21105.joss.01299.pdf

Thanks!

[kyleniemeyer]

@whedon assign @lpantano as editor

[whedon]

OK, the editor is @lpantano

[marouenbg]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[marouenbg]

Thanks for your time @lpantano . I just added the doi.

[lpantano]

Hi @marouenbg,

I am still trying to find a reviewer for this, I will try one more time and see what happens. If not, I will talk to the editor board to get some help.

Sorry for the delay.

[marouenbg]

Thanks @lpantano for the update. Let me know how it goes.

[arfon]

:wave: how are you getting along finding a reviewer @lpantano?

[lpantano]

Hi Arfon,

I was still trying to find somebody. People in metabolomics I contacted
found this challenging because they don't have a mathematical background to
understand enough the tool.
And we have an internal meeting tomorrow to solve this issue some who.
Thanks for proposing a reviewer.

Cheers

[lpantano]

@whedon assign @wmegchel as reviewer

[lpantano]

@whedon start review

[whedon]

OK, the reviewer is @wmegchel

[lpantano]

@whedon start review

[lpantano]

@whedon add @prasunanand as reviewer

[whedon]

OK, @prasunanand is now a reviewer

[lpantano]

@arfon, whedon is not starting the review, anything else I have to trigger to move this to review?

[arfon]

@whedon start review

[arfon]

@whedon assign @wmegchel as reviewer

[whedon]

OK, the reviewer is @wmegchel

[arfon]

@whedon add @prasunanand as reviewer

[whedon]

OK, @prasunanand is now a reviewer

[arfon]

@whedon start review

[whedon]

OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/1363. Feel free to close this issue now!

[arfon]

@arfon, whedon is not starting the review, anything else I have to trigger to move this to review?

Not sure what was going on with Whedon. Re-assigning the reviewers seemed to help here.