Joss-reviews: [PRE REVIEW]: Comet Time Series (CometTS) Visualizer

[whedon]

Submitting author: @jshermeyer (Jacob Shermeyer)
Repository: https://github.com/CosmiQ/CometTS
Version: v1.0
Editor: @Kevin-Mattheus-Moerman
Reviewers: @rhiever, @zhampel

Author instructions

Thanks for submitting your paper to JOSS @jshermeyer. The JOSS editor (shown at the top of this issue) will work with you on this issue to find a reviewer for your submission before creating the main review issue.

@jshermeyer if you have any suggestions for potential reviewers then please mention them here in this thread. In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission.

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

[whedon]

Hello human, I'm @whedon. I'm here to help you with some common editorial tasks. @Kevin-Mattheus-Moerman it looks like you're currently assigned as the editor for this paper :tada:

For a list of things I can do to help you, just type:

@whedon commands

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #866 with the following error:

% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed

0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 12 0 12 0 0 138 0 --:--:-- --:--:-- --:--:-- 139
pandoc-citeproc: reference Holden:2015 not found
pandoc: /ExamplePlots/Workflow.png: openBinaryFile: does not exist (No such file or directory)
Looks like we failed to compile the PDF

[arfon]

:wave: @Kevin-Mattheus-Moerman - the submitting author suggested you as the handling editor.

[Kevin-Mattheus-Moerman]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #866 with the following error:

% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed

0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 12 0 12 0 0 217 0 --:--:-- --:--:-- --:--:-- 218
pandoc-citeproc: reference Holden:2015 not found
pandoc: /ExamplePlots/Workflow.png: openBinaryFile: does not exist (No such file or directory)
Looks like we failed to compile the PDF

[Kevin-Mattheus-Moerman]

@jshermeyer before we proceed, can you help address the issue with your paper. It seems it cannot find the references to Holden:2015. Can you check this?

[Kevin-Mattheus-Moerman]

:point_up: @jshermeyer can you check that paper reference to help compile your paper?

[jshermeyer]

Apologies, have been traveling. Will address this next week. Thanks for the reminder!

-Jake

On Sep 10, 2018, at 12:16 PM, Kevin Mattheus Moerman [e-mail] wrote:

☝️ @jshermeyer can you check that paper reference to help compile your paper?

—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub, or mute the thread.

[jshermeyer]

@whedon @Kevin-Mattheus-Moerman Appears I had the wrong year cited in the text, changed from 2015 to 2017 as I have it in the references. Let me know if this fixes the problem.

[Kevin-Mattheus-Moerman]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #866 with the following error:

% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed

0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 12 0 12 0 0 54 0 --:--:-- --:--:-- --:--:-- 54
pandoc: /ExamplePlots/Workflow.png: openBinaryFile: does not exist (No such file or directory)
Looks like we failed to compile the PDF

[Kevin-Mattheus-Moerman]

@jshermeyer you can also do @whedon generate pdf

[jshermeyer]

I see, not sure why we are getting that error? I changed the figure links to be exact rather than relative. Will try to generate the pdf again.

[jshermeyer]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #866 with the following error:

% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed

0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 12 0 12 0 0 39 0 --:--:-- --:--:-- --:--:-- 39
[WARNING] Could not convert image '/tmp/tex2pdf.264/07a3155fd3f393aadbb7924d408cfe826caf23bd.shtml': Cannot load file
Jpeg Invalid marker used
PNG Invalid PNG file, signature broken
Bitmap Invalid Bitmap magic identifier
GIF Invalid Gif signature :

HDR Invalid radiance file signature
Tiff Invalid endian tag value
TGA Invalid bit depth (104)
[WARNING] Could not convert image '/tmp/tex2pdf.264/c7ac2b86a42bd179701410a4c8cc3f71674c2cb6.shtml': Cannot load file
Jpeg Invalid marker used
PNG Invalid PNG file, signature broken
Bitmap Invalid Bitmap magic identifier
GIF Invalid Gif signature :

HDR Invalid radiance file signature
Tiff Invalid endian tag value
TGA not enough bytes
[WARNING] Could not convert image '/tmp/tex2pdf.264/fe3c4d1065495a85aea9d3137690f4086bb1baac.shtml': Cannot load file
Jpeg Invalid marker used
PNG Invalid PNG file, signature broken
Bitmap Invalid Bitmap magic identifier
GIF Invalid Gif signature :

HDR Invalid radiance file signature
Tiff Invalid endian tag value
TGA not enough bytes
Error producing PDF.
! LaTeX Error: Cannot determine size of graphic in /tmp/tex2pdf.264/07a3155fd3f
393aadbb7924d408cfe826caf23bd.shtml (no BoundingBox).

See the LaTeX manual or LaTeX Companion for explanation.
Type H for immediate help.
...

l.240 ...5fd3f393aadbb7924d408cfe826caf23bd.shtml}

Looks like we failed to compile the PDF

[jshermeyer]

And I made it worse

[arfon]

@jshermeyer - please change URLs for images like this:

https://github.com/CosmiQ/CometTS/blob/master/ExamplePlots/Workflow.png

to

https://raw.githubusercontent.com/CosmiQ/CometTS/master/ExamplePlots/Workflow.png

[jshermeyer]

@arfon Thanks, did just that, will try again

[jshermeyer]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[jshermeyer]

@whedon generate pdf

[whedon]

Attempting PDF compilation. Reticulating splines etc...

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[jshermeyer]

@arfon @Kevin-Mattheus-Moerman Thanks both, proof looks good to me.

[Kevin-Mattheus-Moerman]

@whedon assign @rhiever as reviewer

[whedon]

OK, the reviewer is @rhiever

[Kevin-Mattheus-Moerman]

@almarklein is this submission of interest to you?

[Kevin-Mattheus-Moerman]

@jshermeyer are you able to help suggest more reviewers?

[jshermeyer]

@Kevin-Mattheus-Moerman Is there a listing of persons that you would recommend? Or is this just anyone from an academic/research community?

[Kevin-Mattheus-Moerman]

@jshermeyer we can invite anybody from the academic research community. Also there is a list of current reviewers here: https://bit.ly/joss-reviewers

[Kevin-Mattheus-Moerman]

@kmuehlbauer @campagnola @almarklein @AleksMat @atwhite @elboyran would you be interested in reviewing this submission for the Journal of Open Source Software (JOSS)? The review process (which takes place on GitHub) focuses largely on the software and a short paper.
Let me know if you have questions.

[Kevin-Mattheus-Moerman]

@tobifinn @zssherman @djhoese would you be interested in reviewing this submission for the Journal of Open Source Software (JOSS)? The review process (which takes place on GitHub) focuses largely on the software and a short paper.
Let me know if you have questions.

[danielskatz]

👋 @chrismattmann - would you be interested, or possibly able to provide @Kevin-Mattheus-Moerman with suggestions for reviewers in NASA?

[Kevin-Mattheus-Moerman]

@zhampel @jgrss @slandersson @mmann1123 @avanetten would you be interested in reviewing this submission for the Journal of Open Source Software (JOSS)? The review process (which takes place on GitHub) focuses largely on the software and a short paper.
Let me know if you have questions.

[zhampel]

@Kevin-Mattheus-Moerman Yes, I'd be happy to review the CometTS submission.

[Kevin-Mattheus-Moerman]

@whedon add @zhampel as reviewer

[whedon]

OK, @zhampel is now a reviewer

[Kevin-Mattheus-Moerman]

To avoid further delay in processing this submission I'll now start review. I do welcome additional reviewers if any are found, I'll add them on the review issue itself. Thanks all. Let's get started.

[Kevin-Mattheus-Moerman]

@whedon start review magic-word=bananas

[whedon]

OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/1047. Feel free to close this issue now!

[chrismattmann]

@danielskatz yes @dmittman would make a great one, as would @aftimg (Chris Delp)

[whedon]

I'm sorry @dmittman, I'm afraid I can't do that. That's something only editors are allowed to do.

[dmittman]

Fascinating. We need a @whedon at JPL.

[danielskatz]

Hi @dmittman - fancy meeting you here...

In any event, this was the pre-review issue to find reviewers, @Kevin-Mattheus-Moerman is the editor, and he should add you to the actual review issue: #1047

[arfon]

In any event, this was the pre-review issue to find reviewers, @Kevin-Mattheus-Moerman is the editor, and he should add you to the actual review issue: #1047

Closing this as the review is moving forward in #1047