Submitting author: @ResidentMario (Aleksey Bilogur)
Repository: https://github.com/ResidentMario/missingno
Version: 0.4.0
Editor: @Kevin-Mattheus-Moerman
Reviewer: @rhiever
Archive: 10.5281/zenodo.1184723
Status badge code:
HTML: <a href="http://joss.theoj.org/papers/52b4115d6c03864b884fbf3334851322"><img src="http://joss.theoj.org/papers/52b4115d6c03864b884fbf3334851322/status.svg"></a>
Markdown: [](http://joss.theoj.org/papers/52b4115d6c03864b884fbf3334851322)
Reviewers and authors:
Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)
@rhiever, please carry out your review in this issue by updating the checklist below. If you cannot edit the checklist please:
The reviewer guidelines are available here: https://joss.theoj.org/about#reviewer_guidelines. Any questions/concerns please let @Kevin-Mattheus-Moerman know.
### Conflict of interest
paper.md
file include a list of authors with their affiliations?@zkamvar, please carry out your review in this issue by updating the checklist below. If you cannot edit the checklist please:
The reviewer guidelines are available here: https://joss.theoj.org/about#reviewer_guidelines. Any questions/concerns please let @Kevin-Mattheus-Moerman know.
### Conflict of interest
paper.md
file include a list of authors with their affiliations?Hello human, I'm @whedon. I'm here to help you with some common editorial tasks. @rhiever it looks like you're currently assigned as the reviewer for this paper :tada:.
:star: Important :star:
If you haven't already, you should seriously consider unsubscribing from GitHub notifications for this (https://github.com/openjournals/joss-reviews) repository. As a reviewer, you're probably currently watching this repository which means for GitHub's default behaviour you will receive notifications (emails) for all reviews 馃樋
To fix this do the following two things:
For a list of things I can do to help you, just type:
@whedon commands
Attempting PDF compilation. Reticulating splines etc...
PDF failed to compile for issue #547 with the following error:
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 15 0 15 0 0 90 0 --:--:-- --:--:-- --:--:-- 90
Could not find bibliography file: paper.bib
Error running filter pandoc-citeproc:
Filter returned error status 1
Looks like we failed to compile the PDF
@whedon assign @rhiever as reviewer
OK, the reviewer is @rhiever
@rhiever and @zkamvar thank you for acting as reviewers! 馃殌
There are two sets of tick boxes at the top of this issue, one for each of you. If you have minor comments to the author feel free to make them here. For bigger issues you may want to open an issue on this projects repository which you can refer to here in the review issue.
Let me know if you have any questions. Also let me know if you are unable to tick the boxes.
@whedon assign @zkamvar as reviewer
OK, the reviewer is @zkamvar
@whedon assign @rhiever as reviewer
OK, the reviewer is @rhiever
Apologies for the messages. The system is a bit rusty for multiple reviewers.
@ResidentMario I've opened an issue about expanding your paper here. Let me know if you have questions.
Plan to get to this review on Monday, when I've set some time aside to get through several reviews.
@Kevin-Mattheus-Moerman Quick question: the review instructions cite version 0.3.7, but the package is currently at version 0.3.8. What's the fix?
@zkamvar Can you link me to the R package you cited here? I've lost my reference to it and want to add it to the references per this comment.
Hi @ResidentMario, The citation for the package (which includes the reference for the missingno function) is here: https://peerj.com/articles/281/, though I think it would be better to cite the SciPy packages you import (I'll open an issue for this).
@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
https://github.com/openjournals/joss-papers/blob/joss.00547/joss.00547/10.21105.joss.00547.pdf
@ResidentMario @zkamvar @rhiever
馃摉 The paper now renders as a PDF. I've started commenting and providing recommendations on the paper in this issue. Feel free to join there in relation to purely the paper.
I have opened an issue (https://github.com/ResidentMario/missingno/issues/45) regarding the inclusion of example data internal to the package.
I have opened an issue (https://github.com/ResidentMario/missingno/issues/46) regarding tests on non-visualization functions.
@arfon the author (@ResidentMario) asked
Quick question: the review instructions cite version 0.3.7, but the package is currently at version 0.3.8. What's the fix?
Can you help update the version listed or can the user or I do this ourselves?
Question for @Kevin-Mattheus-Moerman: When I'm finished with the review, would you like me to give a brief summary of my assessment (e.g.: https://github.com/openjournals/joss-reviews/issues/514#issuecomment-357365641)?
@zkamvar yes that would be good thank you.
@ResidentMario, this is a fantastic package. It is straightforward enough that I was able to use it for my own data without much effort 馃槂馃憤. The documentation is clear and the examples are wonderful for showing the utility of the package. Because of a lack of tests (though this is partially explained in the CONTRIBUTING.md file), and citations to relevant python software, I would recommend this for acceptance with minor revisions.
My Python setup (3.4.4)
Python 3.4.4 |Anaconda custom (x86_64)| (default, Jan 9 2016, 17:30:09)
[GCC 4.2.1 (Apple Inc. build 5577)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
Thank you for the great package, @ResidentMario. I was able to run and verify most of the examples from the README and can clearly see the utility of this package for my own work. Based on my evaluation of the package, I recommend several minor revisions as listed below.
Agree with @zkamvar's blockers. Adding my own:
geoplot
function not working (https://github.com/ResidentMario/missingno/issues/59)geoplot
function imports (https://github.com/ResidentMario/missingno/issues/60)Strong 馃憤 on @zkamvar's suggestion of having a small example dataset for the examples. I might even elevate that issue to a Blocker.
shapely
and descartes
are actually optional dependencies (https://github.com/ResidentMario/missingno/issues/52)inline
parameter default to False
(https://github.com/ResidentMario/missingno/issues/53)__version__
variable out of the main source file (https://github.com/ResidentMario/missingno/issues/55)
Python 3.6.4 |Anaconda custom (64-bit)| (default, Jan 16 2018, 12:04:33)
Type 'copyright', 'credits' or 'license' for more information
IPython 6.2.1 -- An enhanced Interactive Python. Type '?' for help.
@zkamvar @rhiever I've addressed the bulk of your code comments. You should take a look at the library again (open new issues etcetera), as it's changed significantly in the process.
My current plan is to finish up the library work that was uncovered in the review process and publish a 0.4.0
version with the changes. I'll finish up the remaining comments on the paper last.
@ResidentMario about:
My current plan is to finish up the library work that was uncovered in the review process and publish a 0.4.0 version with the changes.
Sounds good. I recommend minting this new version once we are good to accept. That way the paper/DOI will also point to your latest version and it wont be behind on any final edits.
@zkamvar @rhiever has @ResidentMario addressed your comments sufficiently?
I've checked off the items on my list that have been addressed.
@rhiever thanks for the update. Also thanks for the very thorough review! 馃
Hi! Yes, @ResidentMario has addressed my comments 馃槂.
@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
https://github.com/openjournals/joss-papers/blob/joss.00547/joss.00547/10.21105.joss.00547.pdf
I believe the other remaining non-paper issues have been addressed. I've finished tweaking the paper to my understanding of it, but:
whedon
is generating?@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
https://github.com/openjournals/joss-papers/blob/joss.00547/joss.00547/10.21105.joss.00547.pdf
@ResidentMario your .bib file looks good. It just looks like you are not citing the articles in the paper. You cite them like this for instance:
[@pandas]
D'oh. OK, let me fix that...
@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
Meant to note here that all of my blockers have been resolved, so this paper has my 馃憤.
@Kevin-Mattheus-Moerman I've made the corrections to the paper in missingno#43. I've also pushed the new version, 0.4.0 to PyPi. The version under review should be updated to 0.4.0, but I'm not sure how to do that. Let me know if there's anything else that needs doing (cc @zkamvar: the paper references have been resolved).
@ResidentMario, my blockers have been resolved 馃憤
The only recommendation I have left would be to name the packages explicitly in text with the citation, for which I've created a PR.
@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
@arfon can you help with this:
The version under review should be updated to 0.4.0, but I'm not sure how to do that.
@ResidentMario can you work on @zkamvar 's PR, seems like a good suggestion.
Done. :heavy_check_mark:
@arfon can you help with this
馃憤 done
@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
@ResidentMario looks like we are good to proceed. 馃殌
Can you please make the DOI of the reviewed software available? That way we can continue to process acceptance of this submission.
the DOI of the reviewed software available
Apologies---what do you mean by this? A little unclear to me. :)
Basically you have to archive your work on a repository with a DOI.
See here: http://joss.theoj.org/about#author_guidelines
Upon successful completion of the review, deposit a copy of your (updated) repository with a data-archiving service such as Zenodo or figshare, issue a DOI for the archive, and update the review issue thread with your DOI.
I use Zenodo (but other services like figshare can be used as well) and these steps: https://guides.github.com/activities/citable-code/
Once you have a DOI link paste it here. Let me know if you need help.
@ResidentMario how are you doing? Have you been able to archive the reviewed software in a service like Zenodo (again these steps are handy: https://guides.github.com/activities/citable-code/). One you provide the archived version DOI we can move on to the next steps.
@rhiever @zkamvar to wrap things up would you be able to tick the remaining boxes at the top of this issue?
Two of my non-blockers have yet to be addressed (still unchecked), but I approve the paper/package regardless.
Great thanks. @arfon over to you
@whedon set 10.5281/zenodo.1184723 as archive
OK. 10.5281/zenodo.1184723 is the archive.
@rhiever - many thanks for your review here and to @Kevin-Mattheus-Moerman for editing this submission.
@ResidentMario - your paper is now accepted into JOSS and your DOI is https://doi.org/10.21105/joss.00547 鈿★笍:rocket: :boom:
:tada::tada::tada: Congratulations on your paper acceptance! :tada::tada::tada:
If you would like to include a link to your paper from your README use the following code snippet:
[](https://doi.org/10.21105/joss.00547)
This is how it will look in your documentation:
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@zkamvar thank you also for your review!
Most helpful comment
@ResidentMario, my blockers have been resolved 馃憤
The only recommendation I have left would be to name the packages explicitly in text with the citation, for which I've created a PR.