Jabref: Snap doesn't build on Ubuntu Raspi ARM64

Created on 11 Aug 2020  路  12Comments  路  Source: JabRef/jabref

I'm on Linux Ubuntu Mate 20.04 Raspberry Pi ARM64 edition. I've successfully installed the JabRef snap from the snap store following the snap instructions here https://docs.jabref.org/collect/jabref-browser-extension

I've also installed the browser extension for both Firefox and Chromium. However when I try to run the final step - connecting the package to the extension - I run up against the following error:

error: snap "jabref" has no plug named "hostfs-mozilla-native-messaging-jabref"

or on chromium

error: snap "jabref" has no plug named "etc-chromium-native-messaging-jabref"

snap depends-on-external bug 馃悰
Source
picture diatomicDisaster

Most helpful comment

@tobiasdiez we should probably sort this in the main repo, since the snap is available on all architectures.
If it isn't building properly it should be disabled on those architectures.

picture LyzardKing on 12 Aug 2020
👍2

All 12 comments

@LyzardKing sorry to bother you again, but do you have an idea what's the problem here? It's supposed to work with the latest snap, right?

tobiasdiez picture tobiasdiez on 11 Aug 2020
👍1

@diatomicDisaster
Could you post the output to:
snap --version
and
snap connections jabref

LyzardKing picture LyzardKing on 11 Aug 2020
👍1

Ok, so it appears the version of JabRef I 'installed' was not really installed. I have tried building from scratch with the latest JDK and I get the following. Is there a method for building JabRef on an ARM64?


./gradlew run
Starting a Gradle Daemon, 1 incompatible Daemon could not be reused, use --status for details

> Task :buildSrc:compileGroovy
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by org.codehaus.groovy.reflection.CachedClass (file:/home/wilfrid/.gradle/wrapper/dists/gradle-6.3-bin/8tpu6egwsccjzp10c1jckl0rx/gradle-6.3/lib/groovy-all-1.3-2.5.10.jar) to method java.util.AbstractCollection.finishToArray(java.lang.Object[],java.util.Iterator)
WARNING: Please consider reporting this to the maintainers of org.codehaus.groovy.reflection.CachedClass
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release

> Configure project :
Project : => 'org.jabref' Java module

> Task :compileJava
Skipped patching fastparse_2.12-1.0.0.jar into test
Skipped patching fastparse-utils_2.12-1.0.0.jar into test2
Skipped patching sourcecode_2.12-0.1.4.jar into test3
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.

> Task :run
Skipped patching fastparse_2.12-1.0.0.jar into test
Skipped patching fastparse-utils_2.12-1.0.0.jar into test2
Skipped patching sourcecode_2.12-0.1.4.jar into test3
Loading library prism_es2 from resource failed: java.lang.UnsatisfiedLinkError: /home/wilfrid/.openjfx/cache/14/libprism_es2.so: /home/wilfrid/.openjfx/cache/14/libprism_es2.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform)
java.lang.UnsatisfiedLinkError: /home/wilfrid/.openjfx/cache/14/libprism_es2.so: /home/wilfrid/.openjfx/cache/14/libprism_es2.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform)
        at java.base/java.lang.ClassLoader$NativeLibrary.load0(Native Method)
        at java.base/java.lang.ClassLoader$NativeLibrary.load(ClassLoader.java:2452)
        at java.base/java.lang.ClassLoader$NativeLibrary.loadLibrary(ClassLoader.java:2508)
        at java.base/java.lang.ClassLoader.loadLibrary0(ClassLoader.java:2704)
        at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2637)
        at java.base/java.lang.Runtime.load0(Runtime.java:745)
        at java.base/java.lang.System.load(System.java:1871)
        at javafx.graphics/com.sun.glass.utils.NativeLibLoader.installLibraryFromResource(NativeLibLoader.java:214)
        at javafx.graphics/com.sun.glass.utils.NativeLibLoader.loadLibraryFromResource(NativeLibLoader.java:194)
        at javafx.graphics/com.sun.glass.utils.NativeLibLoader.loadLibraryInternal(NativeLibLoader.java:135)
        at javafx.graphics/com.sun.glass.utils.NativeLibLoader.loadLibrary(NativeLibLoader.java:53)
        at javafx.graphics/com.sun.prism.es2.ES2Pipeline.lambda$static$0(ES2Pipeline.java:68)
        at java.base/java.security.AccessController.doPrivileged(AccessController.java:312)
        at javafx.graphics/com.sun.prism.es2.ES2Pipeline.<clinit>(ES2Pipeline.java:50)
        at java.base/java.lang.Class.forName0(Native Method)
        at java.base/java.lang.Class.forName(Class.java:340)
        at javafx.graphics/com.sun.prism.GraphicsPipeline.createPipeline(GraphicsPipeline.java:218)
        at javafx.graphics/com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.init(QuantumRenderer.java:91)
        at javafx.graphics/com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:124)
        at java.base/java.lang.Thread.run(Thread.java:832)
Loading library prism_sw from resource failed: java.lang.UnsatisfiedLinkError: /home/wilfrid/.openjfx/cache/14/libprism_sw.so: /home/wilfrid/.openjfx/cache/14/libprism_sw.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform)
java.lang.UnsatisfiedLinkError: /home/wilfrid/.openjfx/cache/14/libprism_sw.so: /home/wilfrid/.openjfx/cache/14/libprism_sw.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform)
        at java.base/java.lang.ClassLoader$NativeLibrary.load0(Native Method)
        at java.base/java.lang.ClassLoader$NativeLibrary.load(ClassLoader.java:2452)
        at java.base/java.lang.ClassLoader$NativeLibrary.loadLibrary(ClassLoader.java:2508)
        at java.base/java.lang.ClassLoader.loadLibrary0(ClassLoader.java:2704)
        at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2637)
        at java.base/java.lang.Runtime.load0(Runtime.java:745)
        at java.base/java.lang.System.load(System.java:1871)
        at javafx.graphics/com.sun.glass.utils.NativeLibLoader.installLibraryFromResource(NativeLibLoader.java:214)
        at javafx.graphics/com.sun.glass.utils.NativeLibLoader.loadLibraryFromResource(NativeLibLoader.java:194)
        at javafx.graphics/com.sun.glass.utils.NativeLibLoader.loadLibraryInternal(NativeLibLoader.java:135)
        at javafx.graphics/com.sun.glass.utils.NativeLibLoader.loadLibrary(NativeLibLoader.java:53)
        at javafx.graphics/com.sun.prism.sw.SWPipeline.lambda$static$0(SWPipeline.java:42)
        at java.base/java.security.AccessController.doPrivileged(AccessController.java:312)
        at javafx.graphics/com.sun.prism.sw.SWPipeline.<clinit>(SWPipeline.java:41)
        at java.base/java.lang.Class.forName0(Native Method)
        at java.base/java.lang.Class.forName(Class.java:340)
        at javafx.graphics/com.sun.prism.GraphicsPipeline.createPipeline(GraphicsPipeline.java:218)
        at javafx.graphics/com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.init(QuantumRenderer.java:91)
        at javafx.graphics/com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:124)
        at java.base/java.lang.Thread.run(Thread.java:832)
Graphics Device initialization failed for :  es2, sw
Error initializing QuantumRenderer: no suitable pipeline found
java.lang.RuntimeException: java.lang.RuntimeException: Error initializing QuantumRenderer: no suitable pipeline found
        at javafx.graphics/com.sun.javafx.tk.quantum.QuantumRenderer.getInstance(QuantumRenderer.java:280)
        at javafx.graphics/com.sun.javafx.tk.quantum.QuantumToolkit.init(QuantumToolkit.java:244)
        at javafx.graphics/com.sun.javafx.tk.Toolkit.getToolkit(Toolkit.java:260)
        at javafx.graphics/com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:267)
        at javafx.graphics/com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:158)
        at javafx.graphics/com.sun.javafx.application.LauncherImpl.startToolkit(LauncherImpl.java:658)
        at javafx.graphics/com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:678)
        at javafx.graphics/com.sun.javafx.application.LauncherImpl.lambda$launchApplication$2(LauncherImpl.java:195)
        at java.base/java.lang.Thread.run(Thread.java:832)
Caused by: java.lang.RuntimeException: Error initializing QuantumRenderer: no suitable pipeline found
        at javafx.graphics/com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.init(QuantumRenderer.java:94)
        at javafx.graphics/com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:124)
        ... 1 more
Exception in thread "main" java.lang.RuntimeException: No toolkit found
        at javafx.graphics/com.sun.javafx.tk.Toolkit.getToolkit(Toolkit.java:272)
        at javafx.graphics/com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:267)
        at javafx.graphics/com.sun.javafx.application.PlatformImpl.startup(PlatformImpl.java:158)
        at javafx.graphics/com.sun.javafx.application.LauncherImpl.startToolkit(LauncherImpl.java:658)
        at javafx.graphics/com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:678)
        at javafx.graphics/com.sun.javafx.application.LauncherImpl.lambda$launchApplication$2(LauncherImpl.java:195)
        at java.base/java.lang.Thread.run(Thread.java:832)

> Task :run FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':run'.
> Process 'command '/usr/lib/jvm/java-14-openjdk-arm64/bin/java'' finished with non-zero exit value 1

* Try:
Run with --info or --debug option to get more log output. Run with --scan to get full insights.

* Exception is:
org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':run'.
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.lambda$executeIfValid$1(ExecuteActionsTaskExecuter.java:205)
        at org.gradle.internal.Try$Failure.ifSuccessfulOrElse(Try.java:263)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:203)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:184)
        at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:114)
        at org.gradle.api.internal.tasks.execution.FinalizePropertiesTaskExecuter.execute(FinalizePropertiesTaskExecuter.java:46)
        at org.gradle.api.internal.tasks.execution.ResolveTaskExecutionModeExecuter.execute(ResolveTaskExecutionModeExecuter.java:62)
        at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:57)
        at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:56)
        at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.executeTask(EventFiringTaskExecuter.java:77)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:55)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:52)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:416)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:406)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:102)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.call(DelegatingBuildOperationExecutor.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter.execute(EventFiringTaskExecuter.java:52)
        at org.gradle.execution.plan.LocalTaskNodeExecutor.execute(LocalTaskNodeExecutor.java:41)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:372)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:359)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:352)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:338)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.lambda$run$0(DefaultPlanExecutor.java:127)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.execute(DefaultPlanExecutor.java:191)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.executeNextNode(DefaultPlanExecutor.java:182)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.run(DefaultPlanExecutor.java:124)
        at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
        at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:48)
        at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:56)
Caused by: org.gradle.process.internal.ExecException: Process 'command '/usr/lib/jvm/java-14-openjdk-arm64/bin/java'' finished with non-zero exit value 1
        at org.gradle.process.internal.DefaultExecHandle$ExecResultImpl.assertNormalExitValue(DefaultExecHandle.java:417)
        at org.javamodularity.moduleplugin.tasks.ModularJavaExec.execFixEffectiveArguments(ModularJavaExec.java:143)
        at org.javamodularity.moduleplugin.tasks.ModularJavaExec.exec(ModularJavaExec.java:88)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:104)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.doExecute(StandardTaskAction.java:49)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:42)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:28)
        at org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:727)
        at org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:694)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$3.run(ExecuteActionsTaskExecuter.java:568)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:402)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:394)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:92)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.run(DelegatingBuildOperationExecutor.java:31)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:553)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:536)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.access$300(ExecuteActionsTaskExecuter.java:109)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.executeWithPreviousOutputFiles(ExecuteActionsTaskExecuter.java:276)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.execute(ExecuteActionsTaskExecuter.java:265)
        at org.gradle.internal.execution.steps.ExecuteStep.lambda$execute$1(ExecuteStep.java:33)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:33)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:26)
        at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:67)
        at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:36)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:49)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:34)
        at org.gradle.internal.execution.steps.CancelExecutionStep.execute(CancelExecutionStep.java:43)
        at org.gradle.internal.execution.steps.TimeoutStep.executeWithoutTimeout(TimeoutStep.java:73)
        at org.gradle.internal.execution.steps.TimeoutStep.execute(TimeoutStep.java:54)
        at org.gradle.internal.execution.steps.CatchExceptionStep.execute(CatchExceptionStep.java:34)
        at org.gradle.internal.execution.steps.CreateOutputsStep.execute(CreateOutputsStep.java:44)
        at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:54)
        at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:38)
        at org.gradle.internal.execution.steps.BroadcastChangingOutputsStep.execute(BroadcastChangingOutputsStep.java:49)
        at org.gradle.internal.execution.steps.CacheStep.executeWithoutCache(CacheStep.java:159)
        at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:72)
        at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:43)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:44)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:33)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:38)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:24)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.executeBecause(SkipUpToDateStep.java:92)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.lambda$execute$0(SkipUpToDateStep.java:85)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:55)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:39)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:76)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:37)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:36)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:26)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:94)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:49)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:79)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:53)
        at org.gradle.internal.execution.steps.ValidateStep.execute(ValidateStep.java:74)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.lambda$execute$2(SkipEmptyWorkStep.java:78)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:78)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:34)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsStartedStep.execute(MarkSnapshottingInputsStartedStep.java:39)
        at org.gradle.internal.execution.steps.LoadExecutionStateStep.execute(LoadExecutionStateStep.java:40)
        at org.gradle.internal.execution.steps.LoadExecutionStateStep.execute(LoadExecutionStateStep.java:28)
        at org.gradle.internal.execution.impl.DefaultWorkExecutor.execute(DefaultWorkExecutor.java:33)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:192)
        ... 30 more


* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/6.3/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 4m 29s
11 actionable tasks: 11 executed
diatomicDisaster picture diatomicDisaster on 12 Aug 2020

Looks like there is a problem with the openjfx cache folder. I googled a bit and found the following threads, hopefully they solve your problem:
https://forum.snapcraft.io/t/openjfx-app-crashing-because-of-prism-pipeline/9645/2
https://github.com/gluonhq/client-gradle-plugin/issues/39

tobiasdiez picture tobiasdiez on 12 Aug 2020

@tobiasdiez we should probably sort this in the main repo, since the snap is available on all architectures.
If it isn't building properly it should be disabled on those architectures.

LyzardKing picture LyzardKing on 12 Aug 2020
👍2

@LyzardKing @tobiasdiez Note that the above output I posted is not when trying to install via Snap, but occurs when I clone the main repo and try to build. Presumably this is because the build tools supplied are only for an AMD64 architecture. When I try to install the snap it simply returns an error stating:


snap "jabref" is not available on stable for this architecture (arm64)
       but exists on other architectures (amd64).

Which I guess it expected behaviour if the snap is not supported on arm64 architectures. I guess essentially my question is, can I build jabref manually on an arm architecture?

diatomicDisaster picture diatomicDisaster on 12 Aug 2020

It appears this issue was discussed elsewhere earlier in the year, but no resolution is given in this thread https://discourse.jabref.org/t/jabref-on-arm64/1860

diatomicDisaster picture diatomicDisaster on 12 Aug 2020

@diatomicDisaster The ./gradlew run should work. But your error suggests an issue with the jdk installation.
You could try to use the jdk14 from here: https://bell-sw.com/pages/downloads/

Siedlerchr picture Siedlerchr on 12 Aug 2020

See also: https://bell-sw.com/pages/liberica-release-notes-14.0.2/

Siedlerchr picture Siedlerchr on 12 Aug 2020

@Siedlerchr Ok I've just tried with the bellsoft JDK, but get the following error:


~/jabref$ ./gradlew assemble

> Configure project :
Project : => 'org.jabref' Java module

> Task :compileJava
Skipped patching fastparse_2.12-1.0.0.jar into test
Skipped patching fastparse-utils_2.12-1.0.0.jar into test2
Skipped patching sourcecode_2.12-0.1.4.jar into test3

> Task :compileJava FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':compileJava'.
> Could not target platform: 'Java SE 14' using tool chain: 'JDK 11 (11)'.

* Try:
Run with --info or --debug option to get more log output. Run with --scan to get full insights.

* Exception is:
org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':compileJava'.
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.lambda$executeIfValid$1(ExecuteActionsTaskExecuter.java:205)
        at org.gradle.internal.Try$Failure.ifSuccessfulOrElse(Try.java:263)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:203)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:184)
        at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:114)
        at org.gradle.api.internal.tasks.execution.FinalizePropertiesTaskExecuter.execute(FinalizePropertiesTaskExecuter.java:46)
        at org.gradle.api.internal.tasks.execution.ResolveTaskExecutionModeExecuter.execute(ResolveTaskExecutionModeExecuter.java:62)
        at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:57)
        at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:56)
        at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.executeTask(EventFiringTaskExecuter.java:77)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:55)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:52)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:416)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:406)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:102)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.call(DelegatingBuildOperationExecutor.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter.execute(EventFiringTaskExecuter.java:52)
        at org.gradle.execution.plan.LocalTaskNodeExecutor.execute(LocalTaskNodeExecutor.java:41)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:372)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:359)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:352)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:338)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.lambda$run$0(DefaultPlanExecutor.java:127)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.execute(DefaultPlanExecutor.java:191)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.executeNextNode(DefaultPlanExecutor.java:182)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.run(DefaultPlanExecutor.java:124)
        at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
        at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:48)
        at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:56)
Caused by: java.lang.IllegalArgumentException: Could not target platform: 'Java SE 14' using tool chain: 'JDK 11 (11)'.
        at org.gradle.api.internal.tasks.AbstractJavaToolChain$UnavailableToolProvider.newCompiler(AbstractJavaToolChain.java:108)
        at org.gradle.api.tasks.compile.JavaCompile.createCompiler(JavaCompile.java:201)
        at org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:170)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:104)
        at org.gradle.api.internal.project.taskfactory.IncrementalInputsTaskAction.doExecute(IncrementalInputsTaskAction.java:32)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:42)
        at org.gradle.api.internal.project.taskfactory.AbstractIncrementalTaskAction.execute(AbstractIncrementalTaskAction.java:25)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:28)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$3.run(ExecuteActionsTaskExecuter.java:568)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:402)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:394)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:92)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.run(DelegatingBuildOperationExecutor.java:31)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:553)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:536)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.access$300(ExecuteActionsTaskExecuter.java:109)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.executeWithPreviousOutputFiles(ExecuteActionsTaskExecuter.java:276)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.execute(ExecuteActionsTaskExecuter.java:265)
        at org.gradle.internal.execution.steps.ExecuteStep.lambda$execute$0(ExecuteStep.java:32)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:32)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:26)
        at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:67)
        at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:36)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:49)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:34)
        at org.gradle.internal.execution.steps.CancelExecutionStep.execute(CancelExecutionStep.java:43)
        at org.gradle.internal.execution.steps.TimeoutStep.executeWithoutTimeout(TimeoutStep.java:73)
        at org.gradle.internal.execution.steps.TimeoutStep.execute(TimeoutStep.java:54)
        at org.gradle.internal.execution.steps.CatchExceptionStep.execute(CatchExceptionStep.java:34)
        at org.gradle.internal.execution.steps.CreateOutputsStep.execute(CreateOutputsStep.java:44)
        at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:54)
        at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:38)
        at org.gradle.internal.execution.steps.BroadcastChangingOutputsStep.execute(BroadcastChangingOutputsStep.java:49)
        at org.gradle.internal.execution.steps.CacheStep.executeWithoutCache(CacheStep.java:159)
        at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:72)
        at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:43)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:44)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:33)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:38)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:24)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.executeBecause(SkipUpToDateStep.java:92)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.lambda$execute$0(SkipUpToDateStep.java:85)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:55)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:39)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:76)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:37)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:36)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:26)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:94)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:49)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:79)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:53)
        at org.gradle.internal.execution.steps.ValidateStep.execute(ValidateStep.java:74)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.lambda$execute$2(SkipEmptyWorkStep.java:78)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:78)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:34)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsStartedStep.execute(MarkSnapshottingInputsStartedStep.java:39)
        at org.gradle.internal.execution.steps.LoadExecutionStateStep.execute(LoadExecutionStateStep.java:40)
        at org.gradle.internal.execution.steps.LoadExecutionStateStep.execute(LoadExecutionStateStep.java:28)
        at org.gradle.internal.execution.impl.DefaultWorkExecutor.execute(DefaultWorkExecutor.java:33)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:192)
        ... 30 more


* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/6.3/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 32s
8 actionable tasks: 8 executed

However I have been able to install a working version of JabRef via the Ubuntu repo directly, the problem I then have is that when I try to link the browser extension. Following the instructions given here https://docs.jabref.org/collect/jabref-browser-extension (granted they are for Debian, but they should be the same for Ubuntu as a derivative?) I get the following error message in the Firefox browser console:

File at path "/opt/jabref/lib/jabrefHost.py" does not exist, or is not executable Subprocess.jsm:151
    call resource://gre/modules/Subprocess.jsm:151

There is no 'mozilla' directory located in /usr/lib on ubuntu so I added the json to my home directory with:

mkdir ~/.mozilla/native-messaging-hosts
cd ~/.mozilla/native-messaging-hosts
vim org.jabref.jabref.json

And pasted the contents from here https://raw.githubusercontent.com/JabRef/jabref/master/buildres/linux/native-messaging-host/firefox/org.jabref.jabref.json

diatomicDisaster picture diatomicDisaster on 12 Aug 2020

@diatomicDisaster You need to download the jdk14 (not 11) as the error message indicates

Could not target platform: 'Java SE 14' using tool chain: 'JDK 11 (11)'.

Siedlerchr picture Siedlerchr on 12 Aug 2020

@Siedlerchr Apologies, it's hot today. I've built it 'successfully' (no errors during the process) with the correct (14) JDK from Bellsoft. But I can't run the compiled binary jabref/build/image/bin/JabRef. It seems to give the same error as I experienced when installing the snap package. Where it complains about not being able to load an AMD64 '.so' on an AARCH64 platform.

Edit: FWIW I have checked the openjfx directory (~/.openjfx/cache/14/) and the .so libraries are there, so I think it's an AMD/ARM issue.

For now I can at least use the binary from the apt repository, but it would be good to have proper browser integration.

diatomicDisaster picture diatomicDisaster on 12 Aug 2020
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