Ivadomed: Create a BIDS-like structure for microscopy data

[mariehbourget]

Aim:
Look into the possibility of organizing microscopy data (2D image, jpg/png/tiff) into BIDS

Motivation:
ivadomed loaders accepts BIDS

Could become a new BIDS Extension Proposal

• How to deal with large histology images (see OpenSlide)?

[mariehbourget]

Link to the proposed BIDS histology example
Link to discussion on Neurostars
Link to the BIDS github issue

[mariehbourget]

The propostition is now an official BEP (BEP031 - Microscopy): https://bids.neuroimaging.io/bep031

[mariehbourget]

Relevant discussion on BIDS mailing list concerning Organ/Location/BodyPart metadata field: https://groups.google.com/g/bids-discussion/c/sJDm5FPnAfg