Harbor: Unable to install Harbor with v1.10.0 Occurred IsADirectoryError

[cy503328434]

installed Harbor with the harbor-offline-installer-v1.10.0.tgz
an error Occurred:
nerated configuration file: /config/log/rsyslog_docker.conf
Traceback (most recent call last):
File "main.py", line 72, in
main()
File "/usr/lib/python3.6/site-packages/click/core.py", line 764, in __call__
return self.main(args, *kwargs)
File "/usr/lib/python3.6/site-packages/click/core.py", line 717, in main
rv = self.invoke(ctx)
File "/usr/lib/python3.6/site-packages/click/core.py", line 956, in invoke
return ctx.invoke(self.callback, *ctx.params)
File "/usr/lib/python3.6/site-packages/click/core.py", line 555, in invoke
return callback(args, **kwargs)
File "main.py", line 43, in main
prepare_nginx(config_dict)
File "/usr/src/app/utils/nginx.py", line 23, in prepare_nginx
render_nginx_template(config_dict)
File "/usr/src/app/utils/nginx.py", line 56, in render_nginx_template
prepare_nginx_certs(config_dict['cert_key_path'], config_dict['cert_path'])
File "/usr/src/app/utils/nginx.py", line 42, in prepare_nginx_certs
shutil.copy2(host_ngx_cert_key_path, real_key_path)
File "/usr/lib/python3.6/shutil.py", line 257, in copy2
copyfile(src, dst, follow_symlinks=follow_symlinks)
File "/usr/lib/python3.6/shutil.py", line 120, in copyfile
with open(src, 'rb') as fsrc:
IsADirectoryError: [Errno 21] Is a directory: '/hostfs/opt/devops/dev/cert'

using the same harbor.yml, I installed success in v1.9.3.

ENV:
docker version: 19.03.5
docker-compose version: 1.25.0

[sheldon-pan]

Unfortunately, I also have this problem with centos7.4 and harbor1.10-offline.

[Step 4]: preparing harbor configs ...
prepare base dir is set to /home/xd/img/harbor
Traceback (most recent call last):
  File "main.py", line 72, in <module>
    main()
  File "/usr/lib/python3.6/site-packages/click/core.py", line 764, in __call__
    return self.main(*args, **kwargs)
  File "/usr/lib/python3.6/site-packages/click/core.py", line 717, in main
    rv = self.invoke(ctx)
  File "/usr/lib/python3.6/site-packages/click/core.py", line 956, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/usr/lib/python3.6/site-packages/click/core.py", line 555, in invoke
    return callback(*args, **kwargs)
  File "main.py", line 42, in main
    prepare_log_configs(config_dict)
  File "/usr/src/app/utils/log.py", line 26, in prepare_log_configs
    **config_dict)
  File "/usr/src/app/utils/jinja.py", line 8, in render_jinja
    with open(dest, 'w') as f:
IsADirectoryError: [Errno 21] Is a directory: '/config/log/logrotate.conf'

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[scs2771]

has anyone see how to fix this? I am receiving the same error now that I am adding certs to the install.

[willzhang]

same error in v2.0.1, what is it?

[root@localhost harbor]# ./install.sh 

[Step 0]: checking if docker is installed ...

Note: docker version: 19.03.12

[Step 1]: checking docker-compose is installed ...

Note: docker-compose version: 1.26.2

[Step 2]: loading Harbor images ...
4dfc82127cd7: Loading layer [==================================================>]  11.15MB/11.15MB
47b4670d0c8c: Loading layer [==================================================>]  4.096kB/4.096kB
59a86010a270: Loading layer [==================================================>]  3.072kB/3.072kB
8da9cc70d93c: Loading layer [==================================================>]  23.44MB/23.44MB
d29455fc5f40: Loading layer [==================================================>]  9.309MB/9.309MB
40f9cab7875f: Loading layer [==================================================>]  33.57MB/33.57MB
Loaded image: goharbor/trivy-adapter-photon:v2.0.1
f6a133cb2572: Loading layer [==================================================>]  10.28MB/10.28MB
acd2089a7647: Loading layer [==================================================>]  8.488MB/8.488MB
160ddbb834ae: Loading layer [==================================================>]  178.7kB/178.7kB
b93d21b59a32: Loading layer [==================================================>]  157.2kB/157.2kB
b8c931eb34bd: Loading layer [==================================================>]  33.28kB/33.28kB
2e6d494d68eb: Loading layer [==================================================>]  17.41kB/17.41kB
5dedceb07ec6: Loading layer [==================================================>]  15.36kB/15.36kB
bfcc4645a906: Loading layer [==================================================>]  3.584kB/3.584kB
Loaded image: goharbor/harbor-portal:v2.0.1
2fa644b45f81: Loading layer [==================================================>]  12.22MB/12.22MB
d1ad40890fc7: Loading layer [==================================================>]  3.584kB/3.584kB
ce9fad8a1c82: Loading layer [==================================================>]   2.56kB/2.56kB
67b8071f0c5a: Loading layer [==================================================>]  46.52MB/46.52MB
a9620284cd5e: Loading layer [==================================================>]  5.632kB/5.632kB
08026e081903: Loading layer [==================================================>]   51.2kB/51.2kB
455144b92cb5: Loading layer [==================================================>]  47.34MB/47.34MB
5a0b179edfe6: Loading layer [==================================================>]   2.56kB/2.56kB
Loaded image: goharbor/harbor-core:v2.0.1
d793bae4f6cd: Loading layer [==================================================>]  12.22MB/12.22MB
37bc5ee2f872: Loading layer [==================================================>]  3.584kB/3.584kB
78da87a5755a: Loading layer [==================================================>]   2.56kB/2.56kB
6c8f6f3c4ee6: Loading layer [==================================================>]  35.69MB/35.69MB
716fdde605b5: Loading layer [==================================================>]  36.51MB/36.51MB
Loaded image: goharbor/harbor-jobservice:v2.0.1
99a45366ce4e: Loading layer [==================================================>]  8.435MB/8.435MB
d20e5e66643d: Loading layer [==================================================>]  6.317MB/6.317MB
73eb8f38314b: Loading layer [==================================================>]  16.04MB/16.04MB
512b6e175cf0: Loading layer [==================================================>]  28.25MB/28.25MB
d9dc0e504aed: Loading layer [==================================================>]  22.02kB/22.02kB
be53af8f5ad0: Loading layer [==================================================>]   50.6MB/50.6MB
Loaded image: goharbor/notary-server-photon:v2.0.1
0eadd51ada25: Loading layer [==================================================>]  49.89MB/49.89MB
18b13e8a8839: Loading layer [==================================================>]  3.584kB/3.584kB
e2755348bd4b: Loading layer [==================================================>]  3.072kB/3.072kB
a62d077cd0fe: Loading layer [==================================================>]   2.56kB/2.56kB
9c98500bf643: Loading layer [==================================================>]  3.072kB/3.072kB
33d51c5e29bb: Loading layer [==================================================>]  3.584kB/3.584kB
e9f3f1e2c1cf: Loading layer [==================================================>]  12.29kB/12.29kB
66f402bc9ecf: Loading layer [==================================================>]  5.632kB/5.632kB
Loaded image: goharbor/harbor-log:v2.0.1
ad8d57802e83: Loading layer [==================================================>]  8.441MB/8.441MB
e1ed8500fea6: Loading layer [==================================================>]  4.096kB/4.096kB
8490b02320fa: Loading layer [==================================================>]  3.072kB/3.072kB
e153d67d6e37: Loading layer [==================================================>]  20.94MB/20.94MB
51c195249ffd: Loading layer [==================================================>]  21.76MB/21.76MB
Loaded image: goharbor/registry-photon:v2.0.1
818525ddd265: Loading layer [==================================================>]  8.435MB/8.435MB
eb29d444582b: Loading layer [==================================================>]  6.317MB/6.317MB
9ac7c150b0aa: Loading layer [==================================================>]  14.61MB/14.61MB
118de7396af0: Loading layer [==================================================>]  28.25MB/28.25MB
7f58a60c50a0: Loading layer [==================================================>]  22.02kB/22.02kB
66d4cfbdcf31: Loading layer [==================================================>]  49.17MB/49.17MB
Loaded image: goharbor/notary-signer-photon:v2.0.1
950b2585869c: Loading layer [==================================================>]  116.1MB/116.1MB
90ac3291b314: Loading layer [==================================================>]  12.15MB/12.15MB
01fac6521224: Loading layer [==================================================>]  3.072kB/3.072kB
b12eaa59458a: Loading layer [==================================================>]  49.15kB/49.15kB
194e8fedab1e: Loading layer [==================================================>]  4.096kB/4.096kB
4308b3ef3b0d: Loading layer [==================================================>]  13.03MB/13.03MB
Loaded image: goharbor/clair-photon:v2.0.1
4261ed016572: Loading layer [==================================================>]   8.44MB/8.44MB
6858af1d1e26: Loading layer [==================================================>]   67.5MB/67.5MB
11194ef05958: Loading layer [==================================================>]  3.072kB/3.072kB
cabc2fa0c773: Loading layer [==================================================>]  4.096kB/4.096kB
0a914324569b: Loading layer [==================================================>]  68.33MB/68.33MB
Loaded image: goharbor/chartmuseum-photon:v2.0.1
Loaded image: goharbor/prepare:v2.0.1
3c574d52ca8f: Loading layer [==================================================>]  63.57MB/63.57MB
110d0675acf1: Loading layer [==================================================>]  65.19MB/65.19MB
7e9e0b5f83b2: Loading layer [==================================================>]  5.632kB/5.632kB
cc62802e9fac: Loading layer [==================================================>]   2.56kB/2.56kB
e7b41679bdb2: Loading layer [==================================================>]   2.56kB/2.56kB
b834aea1a9b5: Loading layer [==================================================>]   2.56kB/2.56kB
adbd713a6478: Loading layer [==================================================>]   2.56kB/2.56kB
fb7d245b830e: Loading layer [==================================================>]  10.75kB/10.75kB
Loaded image: goharbor/harbor-db:v2.0.1
ee2e0b1d599f: Loading layer [==================================================>]  8.441MB/8.441MB
e0d7d18a67f9: Loading layer [==================================================>]  4.096kB/4.096kB
675f3bebc4a9: Loading layer [==================================================>]  20.94MB/20.94MB
ae865bc6f2e9: Loading layer [==================================================>]  3.072kB/3.072kB
90b7ec2096a3: Loading layer [==================================================>]  8.721MB/8.721MB
a01119f3dc08: Loading layer [==================================================>]  30.48MB/30.48MB
Loaded image: goharbor/harbor-registryctl:v2.0.1
b51080ad06a0: Loading layer [==================================================>]  10.28MB/10.28MB
Loaded image: goharbor/nginx-photon:v2.0.1
6877651d3dad: Loading layer [==================================================>]  39.45MB/39.45MB
d669ab31064d: Loading layer [==================================================>]  3.072kB/3.072kB
2bfec584ce57: Loading layer [==================================================>]   59.9kB/59.9kB
4a2b47a7af21: Loading layer [==================================================>]  61.95kB/61.95kB
Loaded image: goharbor/redis-photon:v2.0.1
b3f687a8426d: Loading layer [==================================================>]  8.441MB/8.441MB
5ccbc18d5052: Loading layer [==================================================>]  4.096kB/4.096kB
ee6594efb4ec: Loading layer [==================================================>]  3.072kB/3.072kB
d10a03922272: Loading layer [==================================================>]   9.71MB/9.71MB
4b45e21e42b6: Loading layer [==================================================>]  10.53MB/10.53MB
Loaded image: goharbor/clair-adapter-photon:v2.0.1


[Step 3]: preparing environment ...

[Step 4]: preparing harbor configs ...
prepare base dir is set to /data/packages/harbor
Clearing the configuration file: /config/log/logrotate.conf
Clearing the configuration file: /config/log/rsyslog_docker.conf
Generated configuration file: /config/log/logrotate.conf
Generated configuration file: /config/log/rsyslog_docker.conf
Traceback (most recent call last):
  File "main.py", line 15, in <module>
    cli()
  File "/usr/lib/python3.6/site-packages/click/core.py", line 829, in __call__
    return self.main(*args, **kwargs)
  File "/usr/lib/python3.6/site-packages/click/core.py", line 782, in main
    rv = self.invoke(ctx)
  File "/usr/lib/python3.6/site-packages/click/core.py", line 1259, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/usr/lib/python3.6/site-packages/click/core.py", line 1066, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/usr/lib/python3.6/site-packages/click/core.py", line 610, in invoke
    return callback(*args, **kwargs)
  File "/usr/src/app/commands/prepare.py", line 47, in prepare
    prepare_nginx(config_dict)
  File "/usr/src/app/utils/nginx.py", line 23, in prepare_nginx
    render_nginx_template(config_dict)
  File "/usr/src/app/utils/nginx.py", line 56, in render_nginx_template
    prepare_nginx_certs(config_dict['cert_key_path'], config_dict['cert_path'])
  File "/usr/src/app/utils/nginx.py", line 42, in prepare_nginx_certs
    shutil.copy2(host_ngx_cert_key_path, real_key_path)
  File "/usr/lib/python3.6/shutil.py", line 263, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/lib/python3.6/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
IsADirectoryError: [Errno 21] Is a directory: '/hostfs/data/cert'

[willzhang]

i know what's wrong

[root@localhost harbor]# more harbor.yml
# Configuration file of Harbor

# The IP address or hostname to access admin UI and registry service.
# DO NOT use localhost or 127.0.0.1, because Harbor needs to be accessed by external clients.
hostname: registry.harbor.com

# http related config
http:
  # port for http, default is 80. If https enabled, this port will redirect to https port
  port: 80

# https related config
https:
  # https port for harbor, default is 443
  port: 443
  # The path of cert and key files for nginx
  certificate: /data/cert/registry.harbor.com.crt
  private_key: /data/cert/registry.harbor.com.key

this section can't config as path

  certificate: /data/cert/
  private_key: /data/cert/

should be

  certificate: /data/cert/registry.harbor.com.crt
  private_key: /data/cert/registry.harbor.com.key

/data/cert files

[root@localhost harbor]# ll /data/cert/
total 8
-rw-r--r-- 1 root root 2126 Jul 21 23:18 registry.harbor.com.crt
-rw-r--r-- 1 root root 3243 Jul 21 23:18 registry.harbor.com.key

but the harbor.yml say "The path of cert and key files for nginx" ??

finally it ok

[root@localhost harbor]# ./install.sh 

[Step 0]: checking if docker is installed ...

Note: docker version: 19.03.12

[Step 1]: checking docker-compose is installed ...

Note: docker-compose version: 1.26.2

[Step 2]: loading Harbor images ...
Loaded image: goharbor/trivy-adapter-photon:v2.0.1
Loaded image: goharbor/harbor-portal:v2.0.1
Loaded image: goharbor/harbor-core:v2.0.1
Loaded image: goharbor/harbor-jobservice:v2.0.1
Loaded image: goharbor/notary-server-photon:v2.0.1
Loaded image: goharbor/harbor-log:v2.0.1
Loaded image: goharbor/registry-photon:v2.0.1
Loaded image: goharbor/notary-signer-photon:v2.0.1
Loaded image: goharbor/clair-photon:v2.0.1
Loaded image: goharbor/chartmuseum-photon:v2.0.1
Loaded image: goharbor/prepare:v2.0.1
Loaded image: goharbor/harbor-db:v2.0.1
Loaded image: goharbor/harbor-registryctl:v2.0.1
Loaded image: goharbor/nginx-photon:v2.0.1
Loaded image: goharbor/redis-photon:v2.0.1
Loaded image: goharbor/clair-adapter-photon:v2.0.1


[Step 3]: preparing environment ...

[Step 4]: preparing harbor configs ...
prepare base dir is set to /data/packages/harbor
Clearing the configuration file: /config/log/logrotate.conf
Clearing the configuration file: /config/log/rsyslog_docker.conf
Generated configuration file: /config/log/logrotate.conf
Generated configuration file: /config/log/rsyslog_docker.conf
Generated configuration file: /config/nginx/nginx.conf
Generated configuration file: /config/core/env
Generated configuration file: /config/core/app.conf
Generated configuration file: /config/registry/config.yml
Generated configuration file: /config/registryctl/env
Generated configuration file: /config/registryctl/config.yml
Generated configuration file: /config/db/env
Generated configuration file: /config/jobservice/env
Generated configuration file: /config/jobservice/config.yml
Generated and saved secret to file: /data/secret/keys/secretkey
Successfully called func: create_root_cert
Generated configuration file: /compose_location/docker-compose.yml
Clean up the input dir



[Step 5]: starting Harbor ...
Creating network "harbor_harbor" with the default driver
Creating harbor-log ... done
Creating redis         ... done
Creating registry      ... done
Creating harbor-portal ... done
Creating registryctl   ... done
Creating harbor-db     ... done
Creating harbor-core   ... done
Creating harbor-jobservice ... done
Creating nginx             ... done
✔ ----Harbor has been installed and started successfully.----

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.