Fmriprep: FLIRT BBR error: short header read

Created on 10 Aug 2020  路  4Comments  路  Source: nipreps/fmriprep

Hi-

I have 3 data sets for which fmriprep didn't finish cleanly. There are error messages at the bottom of the html reports, and I was wondering if I could have one of you explain them to me. It is hard for me to know what they mean, and how important they are. It appears that intact structural and functional images exist for some, but I would like to know if they are usable. The 3 data sets are attached here.

Thanks,

Jim Waltz
University of Maryland School of Medicine

DataSetsWithErrors.zip

fMRIPrep version: 20.0.2

question
Source
picture jawaltz

All 4 comments

This looks like a duplicate of #1920, and in the past, it has seemed to result from a filesystem synchronization issue. What is your /work filesystem?

effigies picture effigies on 10 Aug 2020

Ah yes. I had to correct my work directory, to specify a drive with more space, and it is possible that those analyses were referencing old work directories, which were either incomplete or gone. Let me try to delete all references to those subjects in work directories and re-run. Thank you,

jawaltz picture jawaltz on 10 Aug 2020
👍1

Deleting all references to those subjects in work directories caused fmriprep to finish without errors. Thanks for your quick response.

jawaltz picture jawaltz on 11 Aug 2020
👍1

Glad you were able to fix the problem!

mgxd picture mgxd on 11 Aug 2020
Was this page helpful?
0 / 5 - 0 ratings

Related issues

tragus1 picture tragus1  路  5Comments
oesteban picture oesteban  路  4Comments
dangom picture dangom  路  4Comments
jdkent picture jdkent  路  5Comments
asqwerty666 picture asqwerty666  路  3Comments