Flux.jl: Pkg.test("Flux") fails

[mkborregaard]

julia> Pkg.test("Flux")
INFO: Testing Flux
Test Summary: | Pass  Total
  Batching    |    3      3
Test Summary: | Pass  Total
  Basics      |    7      7
FeedForward interface: Error During Test
  Got an exception of type DataFlow.Interpreter.Exception{AssertionError} outside of a @test
  AssertionError: FullyConnected only accepts SymbolicNode either as positional or keyword arguments, not both.
   in #FullyConnected#3931(::Array{Any,1}, ::Function, ::Type{MXNet.mx.SymbolicNode}, ::MXNet.mx.SymbolicNode, ::Vararg{MXNet.mx.SymbolicNode,N}) at symbolic-node.jl:654
   in (::MXNet.mx.#kw##FullyConnected)(::Array{Any,1}, ::MXNet.mx.#FullyConnected, ::Type{MXNet.mx.SymbolicNode}, ::MXNet.mx.SymbolicNode, ::Vararg{MXNet.mx.SymbolicNode,N}) at <missing>:0
   in #FullyConnected#3935(::Array{Any,1}, ::Function, ::MXNet.mx.SymbolicNode, ::Vararg{MXNet.mx.SymbolicNode,N}) at symbolic-node.jl:696
   in (::MXNet.mx.#kw##FullyConnected)(::Array{Any,1}, ::MXNet.mx.#FullyConnected, ::MXNet.mx.SymbolicNode) at <missing>:0
   in graph(::DataFlow.Interpreter.Context{DataFlow.Interpreter.##1#2{DataFlow.Interpreter.#iline,DataFlow.Interpreter.##1#2{DataFlow.Interpreter.#ilambda,DataFlow.Interpreter.##1#2{Flux.#imap,DataFlow.Interpreter.##1#2{DataFlow.Interpreter.#iargs,DataFlow.Interpreter.##1#2{DataFlow.Interpreter.#ituple,Flux.MX.#graph′}}}}}}, ::Flux.Affine, ::MXNet.mx.SymbolicNode) at graph.jl:36
   in #tograph#1(::Bool, ::Function, ::Flux.Capacitor, ::MXNet.mx.SymbolicNode, ::Vararg{MXNet.mx.SymbolicNode,N}) at /Users/michael/.julia/v0.5/Flux/src/backend/mxnet/graph.jl:87
   in (::Flux.MX.#kw##tograph)(::Array{Any,1}, ::Flux.MX.#tograph, ::Flux.Capacitor, ::MXNet.mx.SymbolicNode, ::Vararg{MXNet.mx.SymbolicNode,N}) at ./<missing>:0
   in #FeedForward#2(::Symbol, ::Symbol, ::MXNet.mx.Context, ::Type{T}, ::Flux.Chain) at /Users/michael/.julia/v0.5/Flux/src/backend/mxnet/model.jl:121
   in macro expansion; at /Users/michael/.julia/v0.5/Flux/test/backend/mxnet.jl:26 [inlined]
   in macro expansion; at ./test.jl:674 [inlined]
   in macro expansion; at /Users/michael/.julia/v0.5/Flux/test/backend/mxnet.jl:25 [inlined]
   in macro expansion; at ./test.jl:674 [inlined]
   in anonymous at ./<missing>:?
   in include_from_node1(::String) at ./loading.jl:488
   in include_from_node1(::String) at /Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib:?
   in include_from_node1(::String) at ./loading.jl:488
   in include_from_node1(::String) at /Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib:?
   in process_options(::Base.JLOptions) at ./client.jl:265
   in _start() at ./client.jl:321
   in _start() at /Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib:?
INFO: The following warning is normal
[20:33:13] /Users/michael/.julia/v0.5/MXNet/deps/src/mxnet/dmlc-core/include/dmlc/./logging.h:300: [20:33:13] src/operator/tensor/./matrix_op-inl.h:460: Check failed: lshape[1] == rshape[0] (20 vs. 21) dot shape error: (1,20) X (21,15)

Stack trace returned 53 entries:
[bt] (0) 0   libmxnet.so                         0x000000031865d4e8 _ZN4dmlc15LogMessageFatalD2Ev + 40
[bt] (1) 1   libmxnet.so                         0x0000000318bbe02a _ZN5mxnet2op8DotShapeERKN4nnvm9NodeAttrsEPNSt3__16vectorINS1_6TShapeENS5_9allocatorIS7_EEEESB_ + 5050
[bt] (2) 2   libmxnet.so                         0x0000000318ed957a _ZZN4nnvm4pass12_GLOBAL__N_19InferAttrINS_6TShapeEZNKS1_3$_0clENS_5GraphEEUlRKS3_E_DnEES5_OS5_T_PKcSC_SC_SC_SC_T0_T1_ENKUljbE_clEjb + 2698
[bt] (3) 3   libmxnet.so                         0x0000000318ed802a _ZNSt3__110__function6__funcIN4nnvm4pass12_GLOBAL__N_13$_0ENS_9allocatorIS5_EEFNS2_5GraphES8_EEclEOS8_ + 2858
[bt] (4) 4   libmxnet.so                         0x0000000318ec30cb _ZN4nnvm11ApplyPassesENS_5GraphERKNSt3__16vectorINS1_12basic_stringIcNS1_11char_traitsIcEENS1_9allocatorIcEEEENS6_IS8_EEEE + 1419
[bt] (5) 5   libmxnet.so                         0x0000000318c32cb0 _ZN4nnvm9ApplyPassENS_5GraphERKNSt3__112basic_stringIcNS1_11char_traitsIcEENS1_9allocatorIcEEEE + 208
[bt] (6) 6   libmxnet.so                         0x0000000318c36281 _ZN4nnvm4pass10InferShapeENS_5GraphENSt3__16vectorINS_6TShapeENS2_9allocatorIS4_EEEENS2_12basic_stringIcNS2_11char_traitsIcEENS5_IcEEEE + 929
[bt] (7) 7   libmxnet.so                         0x0000000318c60c13 _ZN5mxnet4exec13GraphExecutor9InitGraphEN4nnvm6SymbolERKNS_7ContextERKNSt3__13mapINS7_12basic_stringIcNS7_11char_traitsIcEENS7_9allocatorIcEEEES4_NS7_4lessISE_EENSC_INS7_4pairIKSE_S4_EEEEEERKNS7_6vectorINS_7NDArrayENSC_ISP_EEEEST_RKNSO_INS_9OpReqTypeENSC_ISU_EEEEST_ + 4163
[bt] (8) 8   libmxnet.so                         0x0000000318c5f1af _ZN5mxnet4exec13GraphExecutor4InitEN4nnvm6SymbolERKNS_7ContextERKNSt3__13mapINS7_12basic_stringIcNS7_11char_traitsIcEENS7_9allocatorIcEEEES4_NS7_4lessISE_EENSC_INS7_4pairIKSE_S4_EEEEEERKNS7_6vectorINS_7NDArrayENSC_ISP_EEEEST_RKNSO_INS_9OpReqTypeENSC_ISU_EEEEST_PNS_8ExecutorE + 111
[bt] (9) 9   libmxnet.so                         0x0000000318c65f0d _ZN5mxnet8Executor4BindEN4nnvm6SymbolERKNS_7ContextERKNSt3__13mapINS6_12basic_stringIcNS6_11char_traitsIcEENS6_9allocatorIcEEEES3_NS6_4lessISD_EENSB_INS6_4pairIKSD_S3_EEEEEERKNS6_6vectorINS_7NDArrayENSB_ISO_EEEESS_RKNSN_INS_9OpReqTypeENSB_IST_EEEESS_PS0_ + 285
[bt] (10) 10  libmxnet.so                         0x0000000318c213ac MXExecutorBindEX + 1852
[bt] (11) 11  libmxnet.so                         0x0000000318c20be9 MXExecutorBind + 89
[bt] (12) 12  ???                                 0x00000003165226d8 0x0 + 13259384536
[bt] (13) 13  ???                                 0x0000000316522949 0x0 + 13259385161
[bt] (14) 14  libjulia.0.5.1.dylib                0x0000000106aeb608 jl_apply_generic + 1000
[bt] (15) 15  ???                                 0x00000003165216f8 0x0 + 13259380472
[bt] (16) 16  ???                                 0x00000003165219e3 0x0 + 13259381219
[bt] (17) 17  libjulia.0.5.1.dylib                0x0000000106aeb608 jl_apply_generic + 1000
[bt] (18) 18  ???                                 0x000000031651cb2c 0x0 + 13259361068
[bt] (19) 19  ???                                 0x000000031651cc7e 0x0 + 13259361406
[bt] (20) 20  ???                                 0x0000000316500f1e 0x0 + 13259247390
[bt] (21) 21  ???                                 0x00000003165438aa 0x0 + 13259520170
[bt] (22) 22  ???                                 0x0000000316543e77 0x0 + 13259521655
[bt] (23) 23  libjulia.0.5.1.dylib                0x0000000106aeb608 jl_apply_generic + 1000
[bt] (24) 24  libjulia.0.5.1.dylib                0x0000000106b013b8 do_call + 200
[bt] (25) 25  libjulia.0.5.1.dylib                0x0000000106aff73c eval + 860
[bt] (26) 26  libjulia.0.5.1.dylib                0x0000000106b17aa7 jl_toplevel_eval_flex + 1511
[bt] (27) 27  libjulia.0.5.1.dylib                0x0000000106af9333 jl_toplevel_eval_in_warn + 899
[bt] (28) 28  ???                                 0x00000003165430d5 0x0 + 13259518165
[bt] (29) 29  ???                                 0x00000003164f9a1e 0x0 + 13259217438
[bt] (30) 30  ???                                 0x00000003164fa720 0x0 + 13259220768
[bt] (31) 31  libjulia.0.5.1.dylib                0x0000000106b17a03 jl_toplevel_eval_flex + 1347
[bt] (32) 32  libjulia.0.5.1.dylib                0x0000000106af54fe jl_parse_eval_all + 1214
[bt] (33) 33  libjulia.0.5.1.dylib                0x0000000106b1813b jl_load_ + 187
[bt] (34) 34  sys.dylib                           0x00000001085221bf julia_include_from_node1_20312 + 479
[bt] (35) 35  sys.dylib                           0x00000001085223cc jlcall_include_from_node1_20312 + 12
[bt] (36) 36  libjulia.0.5.1.dylib                0x0000000106aeb608 jl_apply_generic + 1000
[bt] (37) 37  libjulia.0.5.1.dylib                0x0000000106b013b8 do_call + 200
[bt] (38) 38  libjulia.0.5.1.dylib                0x0000000106aff73c eval + 860
[bt] (39) 39  libjulia.0.5.1.dylib                0x0000000106b0102c eval_body + 1180
[bt] (40) 40  libjulia.0.5.1.dylib                0x0000000106b17ab2 jl_toplevel_eval_flex + 1522
[bt] (41) 41  libjulia.0.5.1.dylib                0x0000000106af54fe jl_parse_eval_all + 1214
[bt] (42) 42  libjulia.0.5.1.dylib                0x0000000106b1813b jl_load_ + 187
[bt] (43) 43  sys.dylib                           0x00000001085221bf julia_include_from_node1_20312 + 479
[bt] (44) 44  sys.dylib                           0x00000001085223cc jlcall_include_from_node1_20312 + 12
[bt] (45) 45  libjulia.0.5.1.dylib                0x0000000106aeb608 jl_apply_generic + 1000
[bt] (46) 46  sys.dylib                           0x0000000108546f88 julia_process_options_21666 + 2440
[bt] (47) 47  sys.dylib                           0x0000000108548b5d julia__start_21657 + 1213
[bt] (48) 48  sys.dylib                           0x0000000108549559 jlcall__start_21657 + 9
[bt] (49) 49  libjulia.0.5.1.dylib                0x0000000106aeb608 jl_apply_generic + 1000
[bt] (50) 50  julia                               0x0000000106ad01e8 true_main + 104
[bt] (51) 51  julia                               0x0000000106ad015c main + 108
[bt] (52) 52  julia                               0x0000000106ad00d4 start + 52

Test Summary:           | Pass  Error  Total
  MXNet                 |    9      1     10
  Backward Pass         |    5             5
  FeedForward interface |           1      1
  Stack Traces          |    3             3
ERROR: LoadError: LoadError: Some tests did not pass: 9 passed, 0 failed, 1 errored, 0 broken.
 in finish(::Base.Test.DefaultTestSet) at ./test.jl:498
 in macro expansion; at ./test.jl:681 [inlined]
 in anonymous at ./<missing>:?
 in include_from_node1(::String) at ./loading.jl:488
 in include_from_node1(::String) at /Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib:?
 in include_from_node1(::String) at ./loading.jl:488
 in include_from_node1(::String) at /Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib:?
 in process_options(::Base.JLOptions) at ./client.jl:265
 in _start() at ./client.jl:321
 in _start() at /Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib:?
while loading /Users/michael/.julia/v0.5/Flux/test/backend/mxnet.jl, in expression starting on line 4
while loading /Users/michael/.julia/v0.5/Flux/test/runtests.jl, in expression starting on line 19
================================[ ERROR: Flux ]=================================

failed process: Process(`/Applications/Julia-0.5.app/Contents/Resources/julia/bin/julia -Ccore2 -J/Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes /Users/michael/.julia/v0.5/Flux/test/runtests.jl`, ProcessExited(1)) [1]

================================================================================
ERROR: Flux had test errors
 in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at ./pkg/entry.jl:749
 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at ./<missing>:0
 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at ./pkg/dir.jl:31
 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at ./file.jl:59
 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./pkg/dir.jl:31
 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./<missing>:0
 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258
 in test(::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258


versioninfo(true)
Julia Version 0.5.1
Commit 6445c82 (2017-03-05 13:25 UTC)
Platform Info:
  OS: macOS (x86_64-apple-darwin13.4.0)
  CPU: Intel(R) Core(TM) i7-5557U CPU @ 3.10GHz
  WORD_SIZE: 64
  uname: Darwin 16.4.0 Darwin Kernel Version 16.4.0: Thu Dec 22 22:53:21 PST 2016; root:xnu-3789.41.3~3/RELEASE_X86_64 x86_64 i386
Memory: 16.0 GB (1037.703125 MB free)
Uptime: 453797.0 sec
Load Avg:  1.72314453125  2.021484375  1.99951171875
Intel(R) Core(TM) i7-5557U CPU @ 3.10GHz: 
       speed         user         nice          sys         idle          irq
#1  3100 MHz     232596 s          0 s     142994 s    1100455 s          0 s
#2  3100 MHz      79704 s          0 s      38395 s    1357794 s          0 s
#3  3100 MHz     212008 s          0 s     101053 s    1162834 s          0 s
#4  3100 MHz      83302 s          0 s      38650 s    1353939 s          0 s

  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Haswell)
  LAPACK: libopenblas64_
  LIBM: libopenlibm
  LLVM: libLLVM-3.7.1 (ORCJIT, broadwell)
Environment:
  TERM = xterm-256color
  PATH = /Applications/Julia-0.5.app/Contents/Resources/julia/bin:/Library/TeX/texbin:/Users/michael/anaconda/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin
  XPC_FLAGS = 0x0
  HOME = /Users/michael
  FONTCONFIG_PATH = /Applications/Julia-0.5.app/Contents/Resources/julia/etc/fonts

Package Directory: /Users/michael/.julia/v0.5
59 required packages:
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 - Atom                          0.5.9+             master
 - BenchmarkTools                0.0.7
 - Bio                           0.4.7
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 - Clustering                    0.7.0
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 - DataFramesMeta                0.1.3
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 - Distributions                 0.12.1
 - FactCheck                     0.4.3
 - FileIO                        0.3.0
 - Flux                          0.1.0
 - FreqTables                    0.0.2
 - GLM                           0.6.1+             master
 - GLPlot                        0.0.4
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 - MarketData                    0.6.0
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162 additional packages:
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 - VectorizedRoutines            0.0.2+             master
 - WeakRefStrings                0.2.0
 - WebSockets                    0.2.1
 - WoodburyMatrices              0.2.2
 - ZMQ                           0.4.1

[MikeInnes]

This error is harmless and you can safely use flux without worrying about it. Looks like the MXNet API has changed in a recent update, so I'll do a patch release to fix this ASAP.

[mkborregaard]

Nice, thanks. BTW, the docs suggest installing MXNet rather than TensorFlow, but the logistic regression example uses tf(m). Trying mxnet(m) throws MethodError: no method matching mxnet(::Flux.Chain). I didn't think it was worth opening a new issue for...

[MikeInnes]

You should be able to fix that with mxnet(m, (784, 1)). Right now you have to specify the input shape to mxnet though I'll change that in 0.1.1 as well (hopefully tonight).

Thanks for reporting this stuff!

[mkborregaard]

Perfect, thanks!

[MikeInnes]

Both fixed by https://github.com/JuliaLang/METADATA.jl/pull/8254 :)