Deeplabcut: The markers won't show up when I click on the image to label bodyparts (GUI)

Created on 19 Nov 2019 · 3Comments · Source: DeepLabCut/DeepLabCut

Using the GUI, I create a project, add videos to it, extract frames and I load them to label them, however once I get the first frame on and I click on the image to label the bodypart, nothing shows up. It doesn't put a marker, nothing.

To Reproduce Steps to reproduce the behavior:

Following this video guide: https://www.youtube.com/watch?v=KcXogR-p5Ak - from 2:00 after selecting the video frames, and the first one shows up on the toolbox, the user in the video simply clicks to label bodyparts, however when I do the same nothing shows up, even when I manually click on bodyparts and adjust the marker size and try again, it doesn't change.

Desktop (please complete the following information about your system):

OS: Ubuntu 16.04 LTS
DeepLabCut Version 2.0

Also the CSV file created doesn't have any values recorded (it is an empty template)
The pan, zoom, Home works.

It just doesn't react at all when I try to label by clicking on the image (nor when I try to pick a color)

This is what I get on the console:

In [2]: deeplabcut.launch_dlc()                                                                                                                                                                             
Created "/home/d/Desktop/DeepLabCut-master/New-D-2019-11-19/videos"
Created "/home/d/Desktop/DeepLabCut-master/New-D-2019-11-19/labeled-data"
Created "/home/d/Desktop/DeepLabCut-master/New-D-2019-11-19/training-datasets"
Created "/home/d/Desktop/DeepLabCut-master/New-D-2019-11-19/dlc-models"
Creating the symbolic link of the video
Created the symlink of /home/d/Desktop/DeepLabCut-master/videos/capture2.avi to /home/d/Desktop/DeepLabCut-master/New-D-2019-11-19/videos/capture2.avi
Created the symlink of /home/d/Desktop/DeepLabCut-master/videos/capture2.avi to /home/d/Desktop/DeepLabCut-master/New-D-2019-11-19/videos/capture2.avi
/home/d/Desktop/DeepLabCut-master/New-D-2019-11-19/videos/capture2.avi
/home/d/Desktop/DeepLabCut-master/New-D-2019-11-19/videos/capture2.avi
Generated "/home/d/Desktop/DeepLabCut-master/New-D-2019-11-19/config.yaml"

A new project with name New-D-2019-11-19 is created at /home/d/Desktop/DeepLabCut-master and a configurable file (config.yaml) is stored there. Change the parameters in this file to adapt to your project's needs.
 Once you have changed the configuration file, use the function 'extract_frames' to select frames for labeling.
. [OPTIONAL] Use the function 'add_new_videos' to add new videos to your project (at any stage).
Config file read successfully.
Extracting frames based on kmeans ...
Kmeans-quantization based extracting of frames from 0.0  seconds to 187.9  seconds.
Extracting and downsampling... 5637  frames from the video.
5637it [00:03, 1789.32it/s]
Kmeans clustering ... (this might take a while)
Extracting frames based on kmeans ...
Kmeans-quantization based extracting of frames from 0.0  seconds to 115.3  seconds.
Extracting and downsampling... 3459  frames from the video.
3459it [00:02, 1697.56it/s]
Kmeans clustering ... (this might take a while)

Frames were selected.
You can now label the frames using the function 'label_frames' (if you extracted enough frames for all videos).
Config file read successfully.
Extracting frames based on kmeans ...
Kmeans-quantization based extracting of frames from 0.0  seconds to 187.9  seconds.
Extracting and downsampling... 5637  frames from the video.
5637it [00:03, 1774.70it/s]
Kmeans clustering ... (this might take a while)
Extracting frames based on kmeans ...
Kmeans-quantization based extracting of frames from 0.0  seconds to 115.3  seconds.
Extracting and downsampling... 3459  frames from the video.
3459it [00:01, 1822.60it/s]
Kmeans clustering ... (this might take a while)

Frames were selected.
You can now label the frames using the function 'label_frames' (if you extracted enough frames for all videos).

Source