Confirmed
I see that after clean start(no tabs) View check marks aren't checked at all. fixed.
beta updated; is it fixed?
Unfortunately, no. I see same behaviour.
Note, the problem presents for that part:

Checked the last beta. Issue is still there.
new/fixed beta: cudatext-win-x64-1.133.6.4b.zip
Yeah. Fixed. But why it blinks when we disable 'toggle always on top'? Only on disabling?
well, 'it recreates the window handle'...