Cms: Running `php craft off` removes changes made to project config before they are applied

[lassemt]

Description

After updating to 3.5.12 project config changes are not applied as config (.yaml) files are being removed if running php craft off before php craft project-config/apply

Steps to reproduce

1. Update to 3.5.12.
2. Create a new section single and see config/project/section/ directory get new config file for section.
3. Sync files to a production environment, make sure the new single .yaml file is among the synced files.
4. Run php craft off and see the new file disappear.

Additional info

Downgrading to 3.5.11.1 fixes the problem. Creating a new single section in 3.5.11.1 and running php craft off before php craft project-config/apply for applying changes in the same production environment works as expected.

• Craft version: 3.5.12.0 and 3.5.12.1
• PHP version: 7.4.10
• Database driver & version: MySQL 8.0.21
• Plugins & versions: Minify:1.2.10 & Twigpack:1.2.6

[lassemt]

Reverting changes made in 502dde852e361ebc69a81cb75a4a1c9df115dc1d solves this, but reopens previous issue #6913 then.

[brandonkelly]

Thanks for reporting that! Just fixed for the next release.

[brandonkelly]

Craft 3.5.13 is out now with that fix.

[lassemt]

Craft 3.5.13 is out now with that fix.

Just tested, deployment is running silky smooth again. Thanks ✨