Caffe: Unable to make caffe on MacOS 10.9

Created on 12 Apr 2015  ·  9Comments  ·  Source: BVLC/caffe

MacOS 10.9, Cuda 6.5, Opencv 3.0, Anaconda
In Opencv 2.4.11 I was facing similar problem, solution was including library opencv_imgcodecs. But this was available only in opencv 3.0. But even after installing opencv 3.0.. I am getting same error, although in a different part. Any help appreciated.

It might seem there is a problem with leveldb, but all the environment variables in leveldb have -stdlib=libstdc++. So i can't figure out the problem.

PROTOC src/caffe/proto/caffe.proto
CXX src/caffe/blob.cpp
CXX src/caffe/common.cpp
CXX src/caffe/data_transformer.cpp
CXX src/caffe/internal_thread.cpp
CXX src/caffe/layer_factory.cpp
CXX src/caffe/layers/absval_layer.cpp
CXX src/caffe/layers/accuracy_layer.cpp
CXX src/caffe/layers/argmax_layer.cpp
CXX src/caffe/layers/base_conv_layer.cpp
CXX src/caffe/layers/base_data_layer.cpp
CXX src/caffe/layers/bnll_layer.cpp
CXX src/caffe/layers/concat_layer.cpp
CXX src/caffe/layers/contrastive_loss_layer.cpp
CXX src/caffe/layers/conv_layer.cpp
CXX src/caffe/layers/cudnn_conv_layer.cpp
CXX src/caffe/layers/cudnn_pooling_layer.cpp
CXX src/caffe/layers/cudnn_relu_layer.cpp
CXX src/caffe/layers/cudnn_sigmoid_layer.cpp
CXX src/caffe/layers/cudnn_softmax_layer.cpp
CXX src/caffe/layers/cudnn_tanh_layer.cpp
CXX src/caffe/layers/data_layer.cpp
CXX src/caffe/layers/deconv_layer.cpp
CXX src/caffe/layers/dropout_layer.cpp
CXX src/caffe/layers/dummy_data_layer.cpp
CXX src/caffe/layers/eltwise_layer.cpp
CXX src/caffe/layers/euclidean_loss_layer.cpp
CXX src/caffe/layers/exp_layer.cpp
CXX src/caffe/layers/flatten_layer.cpp
CXX src/caffe/layers/hdf5_data_layer.cpp
CXX src/caffe/layers/hdf5_output_layer.cpp
CXX src/caffe/layers/hinge_loss_layer.cpp
CXX src/caffe/layers/im2col_layer.cpp
CXX src/caffe/layers/image_data_layer.cpp
CXX src/caffe/layers/infogain_loss_layer.cpp
CXX src/caffe/layers/inner_product_layer.cpp
CXX src/caffe/layers/loss_layer.cpp
CXX src/caffe/layers/lrn_layer.cpp
CXX src/caffe/layers/memory_data_layer.cpp
CXX src/caffe/layers/multinomial_logistic_loss_layer.cpp
CXX src/caffe/layers/mvn_layer.cpp
CXX src/caffe/layers/neuron_layer.cpp
CXX src/caffe/layers/pooling_layer.cpp
CXX src/caffe/layers/power_layer.cpp
CXX src/caffe/layers/prelu_layer.cpp
CXX src/caffe/layers/relu_layer.cpp
CXX src/caffe/layers/sigmoid_cross_entropy_loss_layer.cpp
CXX src/caffe/layers/sigmoid_layer.cpp
CXX src/caffe/layers/silence_layer.cpp
CXX src/caffe/layers/slice_layer.cpp
CXX src/caffe/layers/softmax_layer.cpp
CXX src/caffe/layers/softmax_loss_layer.cpp
CXX src/caffe/layers/split_layer.cpp
CXX src/caffe/layers/tanh_layer.cpp
CXX src/caffe/layers/threshold_layer.cpp
CXX src/caffe/layers/window_data_layer.cpp
CXX src/caffe/net.cpp
CXX src/caffe/solver.cpp
CXX src/caffe/syncedmem.cpp
CXX src/caffe/util/benchmark.cpp
CXX src/caffe/util/cudnn.cpp
CXX src/caffe/util/db.cpp
CXX src/caffe/util/im2col.cpp
CXX src/caffe/util/insert_splits.cpp
CXX src/caffe/util/io.cpp
CXX src/caffe/util/math_functions.cpp
CXX src/caffe/util/upgrade_proto.cpp
NVCC src/caffe/layers/absval_layer.cu
NVCC src/caffe/layers/base_data_layer.cu
NVCC src/caffe/layers/bnll_layer.cu
NVCC src/caffe/layers/concat_layer.cu
NVCC src/caffe/layers/contrastive_loss_layer.cu
NVCC src/caffe/layers/conv_layer.cu
NVCC src/caffe/layers/cudnn_conv_layer.cu
NVCC src/caffe/layers/cudnn_pooling_layer.cu
NVCC src/caffe/layers/cudnn_relu_layer.cu
NVCC src/caffe/layers/cudnn_sigmoid_layer.cu
NVCC src/caffe/layers/cudnn_softmax_layer.cu
NVCC src/caffe/layers/cudnn_tanh_layer.cu
NVCC src/caffe/layers/deconv_layer.cu
NVCC src/caffe/layers/dropout_layer.cu
NVCC src/caffe/layers/eltwise_layer.cu
NVCC src/caffe/layers/euclidean_loss_layer.cu
NVCC src/caffe/layers/exp_layer.cu
NVCC src/caffe/layers/hdf5_data_layer.cu
NVCC src/caffe/layers/hdf5_output_layer.cu
NVCC src/caffe/layers/im2col_layer.cu
NVCC src/caffe/layers/inner_product_layer.cu
NVCC src/caffe/layers/lrn_layer.cu
NVCC src/caffe/layers/mvn_layer.cu
NVCC src/caffe/layers/pooling_layer.cu
NVCC src/caffe/layers/power_layer.cu
NVCC src/caffe/layers/prelu_layer.cu
NVCC src/caffe/layers/relu_layer.cu
NVCC src/caffe/layers/sigmoid_cross_entropy_loss_layer.cu
NVCC src/caffe/layers/sigmoid_layer.cu
NVCC src/caffe/layers/silence_layer.cu
NVCC src/caffe/layers/slice_layer.cu
NVCC src/caffe/layers/softmax_layer.cu
NVCC src/caffe/layers/softmax_loss_layer.cu
NVCC src/caffe/layers/split_layer.cu
NVCC src/caffe/layers/tanh_layer.cu
NVCC src/caffe/layers/threshold_layer.cu
NVCC src/caffe/util/im2col.cu
NVCC src/caffe/util/math_functions.cu
CXX tools/caffe.cpp
CXX tools/compute_image_mean.cpp
CXX tools/convert_imageset.cpp
CXX tools/device_query.cpp
CXX tools/extract_features.cpp
CXX tools/finetune_net.cpp
CXX tools/net_speed_benchmark.cpp
CXX tools/test_net.cpp
CXX tools/train_net.cpp
CXX tools/upgrade_net_proto_binary.cpp
CXX tools/upgrade_net_proto_text.cpp
CXX examples/cifar10/convert_cifar_data.cpp
CXX examples/mnist/convert_mnist_data.cpp
CXX examples/siamese/convert_mnist_siamese_data.cpp
CXX .build_release/src/caffe/proto/caffe.pb.cc
AR -o .build_release/lib/libcaffe.a
LD -o .build_release/lib/libcaffe.so
clang: warning: argument unused during compilation: '-pthread'
ld: warning: directory not found for option '-L/opt/intel/mkl/lib/intel64'
Undefined symbols for architecture x86_64:
"leveldb::DB::Open(leveldb::Options const&, std::string const&, leveldb::DB*_)", referenced from:
caffe::db::LevelDB::Open(std::string const&, caffe::db::Mode) in db.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *_* [.build_release/lib/libcaffe.so] Error 1

picture deepsamal

Most helpful comment

I have the same problem, I tried every method but it is no work; my error log as bellow:
MacOS 10.12.6, Opencv 2.7.14.0, Cuda and Anaconda is the latest version, I do not known how to
get the Cuda and Anaconda version

➜  caffe git:(master) make all -j4
PROTOC src/caffe/proto/caffe.proto
CXX src/caffe/blob.cpp
CXX src/caffe/common.cpp
CXX src/caffe/data_transformer.cpp
CXX src/caffe/internal_thread.cpp
CXX src/caffe/layer.cpp
CXX src/caffe/layer_factory.cpp
CXX src/caffe/layers/absval_layer.cpp
CXX src/caffe/layers/accuracy_layer.cpp
CXX src/caffe/layers/argmax_layer.cpp
CXX src/caffe/layers/base_conv_layer.cpp
CXX src/caffe/layers/base_data_layer.cpp
CXX src/caffe/layers/batch_norm_layer.cpp
CXX src/caffe/layers/batch_reindex_layer.cpp
CXX src/caffe/layers/bias_layer.cpp
CXX src/caffe/layers/bnll_layer.cpp
CXX src/caffe/layers/concat_layer.cpp
CXX src/caffe/layers/contrastive_loss_layer.cpp
CXX src/caffe/layers/conv_layer.cpp
CXX src/caffe/layers/crop_layer.cpp
CXX src/caffe/layers/cudnn_conv_layer.cpp
CXX src/caffe/layers/cudnn_lcn_layer.cpp
CXX src/caffe/layers/cudnn_lrn_layer.cpp
CXX src/caffe/layers/cudnn_pooling_layer.cpp
CXX src/caffe/layers/cudnn_relu_layer.cpp
CXX src/caffe/layers/cudnn_sigmoid_layer.cpp
CXX src/caffe/layers/cudnn_softmax_layer.cpp
CXX src/caffe/layers/cudnn_tanh_layer.cpp
CXX src/caffe/layers/data_layer.cpp
CXX src/caffe/layers/deconv_layer.cpp
CXX src/caffe/layers/dropout_layer.cpp
In file included from src/caffe/layers/crop_layer.cpp:10:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/layers/dummy_data_layer.cpp
CXX src/caffe/layers/eltwise_layer.cpp
CXX src/caffe/layers/elu_layer.cpp
CXX src/caffe/layers/embed_layer.cpp
CXX src/caffe/layers/euclidean_loss_layer.cpp
CXX src/caffe/layers/exp_layer.cpp
CXX src/caffe/layers/filter_layer.cpp
CXX src/caffe/layers/flatten_layer.cpp
CXX src/caffe/layers/hdf5_data_layer.cpp
CXX src/caffe/layers/hdf5_output_layer.cpp
CXX src/caffe/layers/hinge_loss_layer.cpp
CXX src/caffe/layers/im2col_layer.cpp
CXX src/caffe/layers/image_data_layer.cpp
CXX src/caffe/layers/infogain_loss_layer.cpp
CXX src/caffe/layers/inner_product_layer.cpp
CXX src/caffe/layers/input_layer.cpp
CXX src/caffe/layers/log_layer.cpp
CXX src/caffe/layers/loss_layer.cpp
CXX src/caffe/layers/lrn_layer.cpp
CXX src/caffe/layers/lstm_layer.cpp
CXX src/caffe/layers/lstm_unit_layer.cpp
CXX src/caffe/layers/memory_data_layer.cpp
CXX src/caffe/layers/multinomial_logistic_loss_layer.cpp
In file included from src/caffe/layers/lstm_layer.cpp:8:
In file included from ./include/caffe/layers/lstm_layer.hpp:11:
In file included from ./include/caffe/layers/recurrent_layer.hpp:11:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/layers/mvn_layer.cpp
In file included from src/caffe/layers/lstm_unit_layer.cpp:6:
In file included from ./include/caffe/layers/lstm_layer.hpp:11:
In file included from ./include/caffe/layers/recurrent_layer.hpp:11:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/layers/neuron_layer.cpp
CXX src/caffe/layers/parameter_layer.cpp
CXX src/caffe/layers/pooling_layer.cpp
CXX src/caffe/layers/power_layer.cpp
CXX src/caffe/layers/prelu_layer.cpp
CXX src/caffe/layers/recurrent_layer.cpp
CXX src/caffe/layers/reduction_layer.cpp
CXX src/caffe/layers/relu_layer.cpp
CXX src/caffe/layers/reshape_layer.cpp
In file included from src/caffe/layers/recurrent_layer.cpp:8:
In file included from ./include/caffe/layers/recurrent_layer.hpp:11:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/layers/rnn_layer.cpp
CXX src/caffe/layers/scale_layer.cpp
CXX src/caffe/layers/sigmoid_cross_entropy_loss_layer.cpp
CXX src/caffe/layers/sigmoid_layer.cpp
In file included from src/caffe/layers/rnn_layer.cpp:8:
In file included from ./include/caffe/layers/rnn_layer.hpp:11:
In file included from ./include/caffe/layers/recurrent_layer.hpp:11:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/layers/silence_layer.cpp
CXX src/caffe/layers/slice_layer.cpp
CXX src/caffe/layers/softmax_layer.cpp
CXX src/caffe/layers/softmax_loss_layer.cpp
CXX src/caffe/layers/split_layer.cpp
CXX src/caffe/layers/spp_layer.cpp
CXX src/caffe/layers/tanh_layer.cpp
CXX src/caffe/layers/threshold_layer.cpp
CXX src/caffe/layers/tile_layer.cpp
CXX src/caffe/layers/window_data_layer.cpp
CXX src/caffe/net.cpp
CXX src/caffe/parallel.cpp
CXX src/caffe/solver.cpp
CXX src/caffe/solvers/adadelta_solver.cpp
In file included from src/caffe/solvers/adadelta_solver.cpp:3:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/solvers/adagrad_solver.cpp
CXX src/caffe/solvers/adam_solver.cpp
In file included from src/caffe/solver.cpp:6:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/solvers/nesterov_solver.cpp
In file included from src/caffe/net.cpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
src/caffe/net.cpp:557:3: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
  LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: Forward(bottom, loss) "
  ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
2 warnings generated.
CXX src/caffe/solvers/rmsprop_solver.cpp
In file included from src/caffe/solvers/adagrad_solver.cpp:3:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/solvers/sgd_solver.cpp
In file included from src/caffe/solvers/adam_solver.cpp:3:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/syncedmem.cpp
In file included from src/caffe/solvers/nesterov_solver.cpp:3:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/util/benchmark.cpp
CXX src/caffe/util/blocking_queue.cpp
In file included from src/caffe/solvers/rmsprop_solver.cpp:3:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/util/cudnn.cpp
CXX src/caffe/util/db.cpp
CXX src/caffe/util/db_leveldb.cpp
CXX src/caffe/util/db_lmdb.cpp
In file included from src/caffe/solvers/sgd_solver.cpp:4:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/util/hdf5.cpp
CXX src/caffe/util/im2col.cpp
CXX src/caffe/util/insert_splits.cpp
src/caffe/util/blocking_queue.cpp:49:7: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
      LOG_EVERY_N(INFO, 1000)<< log_on_wait;
      ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/util/io.cpp
CXX src/caffe/util/math_functions.cpp
CXX src/caffe/util/signal_handler.cpp
CXX src/caffe/util/upgrade_proto.cpp
CXX tools/caffe.cpp
CXX tools/compute_image_mean.cpp
In file included from src/caffe/util/signal_handler.cpp:7:
In file included from ./include/caffe/util/signal_handler.h:5:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/convert_imageset.cpp
CXX tools/device_query.cpp
CXX tools/extract_features.cpp
CXX tools/finetune_net.cpp
CXX tools/net_speed_benchmark.cpp
In file included from tools/caffe.cpp:15:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/test_net.cpp
In file included from tools/finetune_net.cpp:1:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/train_net.cpp
In file included from tools/extract_features.cpp:9:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/upgrade_net_proto_binary.cpp
In file included from tools/net_speed_benchmark.cpp:1:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/upgrade_net_proto_text.cpp
In file included from tools/test_net.cpp:1:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/upgrade_solver_proto_text.cpp
In file included from tools/train_net.cpp:1:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX examples/cifar10/convert_cifar_data.cpp
In file included from tools/upgrade_net_proto_binary.cpp:10:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX examples/cpp_classification/classification.cpp
In file included from tools/upgrade_net_proto_text.cpp:10:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX examples/mnist/convert_mnist_data.cpp
CXX examples/siamese/convert_mnist_siamese_data.cpp
In file included from tools/upgrade_solver_proto_text.cpp:10:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX .build_release/src/caffe/proto/caffe.pb.cc
In file included from examples/cpp_classification/classification.cpp:1:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
AR -o .build_release/lib/libcaffe.a
LD -o .build_release/lib/libcaffe.so.1.0.0
clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument]
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_conv_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_lcn_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_lrn_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_pooling_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_relu_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_sigmoid_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_softmax_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_tanh_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(parallel.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn.o) has no symbols
Undefined symbols for architecture x86_64:
  "cv::imread(cv::String const&, int)", referenced from:
      caffe::WindowDataLayer<float>::load_batch(caffe::Batch<float>*) in window_data_layer.o
      caffe::WindowDataLayer<double>::load_batch(caffe::Batch<double>*) in window_data_layer.o
      caffe::ReadImageToCVMat(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int, int, bool) in io.o
  "cv::imdecode(cv::_InputArray const&, int)", referenced from:
      caffe::DecodeDatumToCVMatNative(caffe::Datum const&) in io.o
      caffe::DecodeDatumToCVMat(caffe::Datum const&, bool) in io.o
  "cv::imencode(cv::String const&, cv::_InputArray const&, std::__1::vector<unsigned char, std::__1::allocator<unsigned char> >&, std::__1::vector<int, std::__1::allocator<int> > const&)", referenced from:
      caffe::ReadImageToDatum(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int, int, int, bool, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, caffe::Datum*) in io.o
  "leveldb::DB::Open(leveldb::Options const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, leveldb::DB**)", referenced from:
      caffe::db::LevelDB::Open(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, caffe::db::Mode) in db_leveldb.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [.build_release/lib/libcaffe.so.1.0.0] Error 1
make: *** Waiting for unfinished jobs....

Any one can help me ?

picture cxy200927099 on 29 Nov 2017
👍2

All 9 comments

# enable pretty build (comment to see full commands)
Q ?= @

Please comment/remove the above line in Makefile.config and compile again. It will show you the arguments and options you use in clang command.

tnarihi picture tnarihi on 14 Apr 2015

@tnarihi Thanks for the advice.
As I wasn't able to compile caffe with opencv 3. I reverted back to Opencv 2.4.11. And Cuda 7.0. Also all env flags have been reverted back to stdc++. Even now I am having similar problem. This is the command causing it-

/usr/bin/clang++ -shared -o .build_release/lib/libcaffe.so .build_release/src/caffe/proto/caffe.pb.o .build_release/src/caffe/blob.o .build_release/src/caffe/common.o .build_release/src/caffe/data_transformer.o .build_release/src/caffe/internal_thread.o .build_release/src/caffe/layer_factory.o .build_release/src/caffe/layers/absval_layer.o .build_release/src/caffe/layers/accuracy_layer.o .build_release/src/caffe/layers/argmax_layer.o .build_release/src/caffe/layers/base_conv_layer.o .build_release/src/caffe/layers/base_data_layer.o .build_release/src/caffe/layers/bnll_layer.o .build_release/src/caffe/layers/concat_layer.o .build_release/src/caffe/layers/contrastive_loss_layer.o .build_release/src/caffe/layers/conv_layer.o .build_release/src/caffe/layers/cudnn_conv_layer.o .build_release/src/caffe/layers/cudnn_pooling_layer.o .build_release/src/caffe/layers/cudnn_relu_layer.o .build_release/src/caffe/layers/cudnn_sigmoid_layer.o .build_release/src/caffe/layers/cudnn_softmax_layer.o .build_release/src/caffe/layers/cudnn_tanh_layer.o .build_release/src/caffe/layers/data_layer.o .build_release/src/caffe/layers/deconv_layer.o .build_release/src/caffe/layers/dropout_layer.o .build_release/src/caffe/layers/dummy_data_layer.o .build_release/src/caffe/layers/eltwise_layer.o .build_release/src/caffe/layers/euclidean_loss_layer.o .build_release/src/caffe/layers/exp_layer.o .build_release/src/caffe/layers/flatten_layer.o .build_release/src/caffe/layers/hdf5_data_layer.o .build_release/src/caffe/layers/hdf5_output_layer.o .build_release/src/caffe/layers/hinge_loss_layer.o .build_release/src/caffe/layers/im2col_layer.o .build_release/src/caffe/layers/image_data_layer.o .build_release/src/caffe/layers/infogain_loss_layer.o .build_release/src/caffe/layers/inner_product_layer.o .build_release/src/caffe/layers/loss_layer.o .build_release/src/caffe/layers/lrn_layer.o .build_release/src/caffe/layers/memory_data_layer.o .build_release/src/caffe/layers/multinomial_logistic_loss_layer.o .build_release/src/caffe/layers/mvn_layer.o .build_release/src/caffe/layers/neuron_layer.o .build_release/src/caffe/layers/pooling_layer.o .build_release/src/caffe/layers/power_layer.o .build_release/src/caffe/layers/prelu_layer.o .build_release/src/caffe/layers/relu_layer.o .build_release/src/caffe/layers/sigmoid_cross_entropy_loss_layer.o .build_release/src/caffe/layers/sigmoid_layer.o .build_release/src/caffe/layers/silence_layer.o .build_release/src/caffe/layers/slice_layer.o .build_release/src/caffe/layers/softmax_layer.o .build_release/src/caffe/layers/softmax_loss_layer.o .build_release/src/caffe/layers/split_layer.o .build_release/src/caffe/layers/tanh_layer.o .build_release/src/caffe/layers/threshold_layer.o .build_release/src/caffe/layers/window_data_layer.o .build_release/src/caffe/net.o .build_release/src/caffe/solver.o .build_release/src/caffe/syncedmem.o .build_release/src/caffe/util/benchmark.o .build_release/src/caffe/util/cudnn.o .build_release/src/caffe/util/db.o .build_release/src/caffe/util/im2col.o .build_release/src/caffe/util/insert_splits.o .build_release/src/caffe/util/io.o .build_release/src/caffe/util/math_functions.o .build_release/src/caffe/util/upgrade_proto.o .build_release/cuda/src/caffe/layers/absval_layer.o .build_release/cuda/src/caffe/layers/base_data_layer.o .build_release/cuda/src/caffe/layers/bnll_layer.o .build_release/cuda/src/caffe/layers/concat_layer.o .build_release/cuda/src/caffe/layers/contrastive_loss_layer.o .build_release/cuda/src/caffe/layers/conv_layer.o .build_release/cuda/src/caffe/layers/cudnn_conv_layer.o .build_release/cuda/src/caffe/layers/cudnn_pooling_layer.o .build_release/cuda/src/caffe/layers/cudnn_relu_layer.o .build_release/cuda/src/caffe/layers/cudnn_sigmoid_layer.o .build_release/cuda/src/caffe/layers/cudnn_softmax_layer.o .build_release/cuda/src/caffe/layers/cudnn_tanh_layer.o .build_release/cuda/src/caffe/layers/deconv_layer.o .build_release/cuda/src/caffe/layers/dropout_layer.o .build_release/cuda/src/caffe/layers/eltwise_layer.o .build_release/cuda/src/caffe/layers/euclidean_loss_layer.o .build_release/cuda/src/caffe/layers/exp_layer.o .build_release/cuda/src/caffe/layers/hdf5_data_layer.o .build_release/cuda/src/caffe/layers/hdf5_output_layer.o .build_release/cuda/src/caffe/layers/im2col_layer.o .build_release/cuda/src/caffe/layers/inner_product_layer.o .build_release/cuda/src/caffe/layers/lrn_layer.o .build_release/cuda/src/caffe/layers/mvn_layer.o .build_release/cuda/src/caffe/layers/pooling_layer.o .build_release/cuda/src/caffe/layers/power_layer.o .build_release/cuda/src/caffe/layers/prelu_layer.o .build_release/cuda/src/caffe/layers/relu_layer.o .build_release/cuda/src/caffe/layers/sigmoid_cross_entropy_loss_layer.o .build_release/cuda/src/caffe/layers/sigmoid_layer.o .build_release/cuda/src/caffe/layers/silence_layer.o .build_release/cuda/src/caffe/layers/slice_layer.o .build_release/cuda/src/caffe/layers/softmax_layer.o .build_release/cuda/src/caffe/layers/softmax_loss_layer.o .build_release/cuda/src/caffe/layers/split_layer.o .build_release/cuda/src/caffe/layers/tanh_layer.o .build_release/cuda/src/caffe/layers/threshold_layer.o .build_release/cuda/src/caffe/util/im2col.o .build_release/cuda/src/caffe/util/math_functions.o -pthread -fPIC -DGTEST_USE_OWN_TR1_TUPLE=1 -DNDEBUG -O2 -DUSE_CUDNN -DWITH_PYTHON_LAYER -DUSE_MKL -I/Users/deepsamal/anaconda/include -I/Users/deepsamal/anaconda/include/python2.7 -I/Users/deepsamal/anaconda/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/Users/deepsamal/Desktop/Research/cudnn-6.5-osx-v2 -I.build_release/src -I./src -I./include -I/usr/local/cuda/include -I/opt/intel/mkl/include -Wall -Wno-sign-compare -Wno-unneeded-internal-declaration -L/Users/deepsamal/anaconda/lib -L/usr/local/lib -L/usr/lib -L/Users/deepsamal/Desktop/Research/cudnn-6.5-osx-v2 -L/usr/local/cuda/lib -L/opt/intel/mkl/lib -L.build_release/lib -lcudart -lcublas -lcurand -lglog -lgflags -lprotobuf -lleveldb -lsnappy -llmdb -lboost_system -lhdf5_hl -lhdf5 -lm -lopencv_core -lopencv_highgui -lopencv_imgproc -lpthread -lboost_thread-mt -lcudnn -lboost_python -lpython2.7 -lmkl_rt -install_name @rpath/libcaffe.so

clang: warning: argument unused during compilation: '-pthread'
Undefined symbols for architecture x86_64:
"google::protobuf::MessageLite::ParseFromString(std::__1::basic_string, std::__1::allocator > const&)", referenced from:
caffe::DataLayer::DataLayerSetUp(std::__1::vectorcaffe::Blob > const&, std::__1::vectorcaffe::Blob > const&) in data_layer.o
caffe::DataLayer::InternalThreadEntry() in data_layer.o
caffe::DataLayer::DataLayerSetUp(std::__1::vectorcaffe::Blob > const&, std::__1::vectorcaffe::Blob > const&) in data_layer.o
caffe::DataLayer::InternalThreadEntry() in data_layer.o
caffe::Net::Forward(std::__1::basic_string, std::__1::allocator > const&, float_) in net.o
caffe::Net::Forward(std::__1::basic_string, std::__1::allocator > const&, double_) in net.o
"google::protobuf::MessageFactory::InternalRegisterGeneratedFile(char const_, void (_)(std::__1::basic_string, std::__1::allocator > const&))", referenced from:
caffe::protobuf_AddDesc_caffe_2eproto() in caffe.pb.o
"google::protobuf::internal::WireFormatLite::ReadString(google::protobuf::io::CodedInputStream_, std::__1::basic_string, std::__1::allocator >_)", referenced from:
caffe::FillerParameter::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream_) in caffe.pb.o
caffe::NetParameter::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream_) in caffe.pb.o
caffe::SolverParameter::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream_) in caffe.pb.o
caffe::SolverState::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream_) in caffe.pb.o
caffe::NetState::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream_) in caffe.pb.o
caffe::NetStateRule::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream_) in caffe.pb.o
caffe::ParamSpec::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream_) in caffe.pb.o
...
"google::protobuf::internal::WireFormatLite::WriteBytes(int, std::__1::basic_string, std::__1::allocator > const&, google::protobuf::io::CodedOutputStream_)", referenced from:
caffe::Datum::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream_) const in caffe.pb.o
"google::protobuf::internal::WireFormatLite::WriteString(int, std::__1::basic_string, std::__1::allocator > const&, google::protobuf::io::CodedOutputStream_)", referenced from:
caffe::FillerParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream_) const in caffe.pb.o
caffe::NetParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream_) const in caffe.pb.o
caffe::SolverParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream_) const in caffe.pb.o
caffe::SolverState::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream_) const in caffe.pb.o
caffe::NetState::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream_) const in caffe.pb.o
caffe::NetStateRule::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream_) const in caffe.pb.o
caffe::ParamSpec::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream_) const in caffe.pb.o
...
"google::protobuf::internal::WireFormatLite::ReadBytes(google::protobuf::io::CodedInputStream_, std::__1::basic_string, std::__1::allocator >_)", referenced from:
caffe::Datum::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream_) in caffe.pb.o
"google::protobuf::internal::StringTypeHandlerBase::Delete(std::__1::basic_string, std::__1::allocator >_)", referenced from:
caffe::NetParameter::NetParameter(caffe::NetParameter const&) in caffe.pb.o
caffe::NetParameter::~NetParameter() in caffe.pb.o
caffe::SolverParameter::SolverParameter(caffe::SolverParameter const&) in caffe.pb.o
caffe::SolverParameter::~SolverParameter() in caffe.pb.o
caffe::NetState::NetState(caffe::NetState const&) in caffe.pb.o
caffe::NetState::~NetState() in caffe.pb.o
caffe::NetStateRule::NetStateRule(caffe::NetStateRule const&) in caffe.pb.o
...
"google::protobuf::MessageLite::SerializeToString(std::__1::basic_string, std::__1::allocator >_) const", referenced from:
caffe::Net::Forward(std::__1::basic_string, std::__1::allocator > const&, float_) in net.o
caffe::Net::Forward(std::__1::basic_string, std::__1::allocator > const&, double_) in net.o
"google::protobuf::DescriptorPool::FindFileByName(std::__1::basic_string, std::__1::allocator > const&) const", referenced from:
caffe::protobuf_AssignDesc_caffe_2eproto() in caffe.pb.o
"google::protobuf::Message::SerializeToOstream(std::__1::basic_ostream >_) const", referenced from:
caffe::WriteProtoToBinaryFile(google::protobuf::Message const&, char const_) in io.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [.build_release/lib/libcaffe.so] Error 1
.....................................................................................................................................................

Also I installed protobuf 2.5.0 instead of 2.6 in lieu with https://github.com/BVLC/caffe/issues/19
But same error occurs.
I also checked my /usr/local/lib/ for protobuf libraries, and these are the ones I could find-
libprotobuf-lite.8.dylib libprotobuf-lite.dylib libprotobuf.a libprotoc.8.dylib libprotoc.dylib
libprotobuf-lite.a libprotobuf.8.dylib libprotobuf.dylib libprotoc.a

Any ideas if I am missing something?

deepsamal picture deepsamal on 14 Apr 2015

@deepsamal
You revert back to libstdc++? Clang default option is libc++ in OS X 10.9+, and CUDA 7.0 now supports libc++, so I think you are recommended to compile with libc++ for all dependencies.
The last command you run doesn't include -stdlib= option (i.e. equivalent to with -stdlib=libc++) , so the problem seems that your protobuf library is compiled with libstdc++ rather than libc++.

According to your log, your search paths of linked libraries are in order as below.

-L/Users/deepsamal/anaconda/lib -L/usr/local/lib -L/usr/lib -L/Users/deepsamal/Desktop/Research/cudnn-6.5-osx-v2 -L/usr/local/cuda/lib -L/opt/intel/mkl/lib -L.build_release/lib

Accordingly, locate protobuf libraries which you are linking to Caffe by using the following command.

locate libprotobuf

Then,

otool -L <path to libprotobuf which is found first in your search path>

I think this will show you which stdlib library you linked to libprotobuf (which you are trying to link to Caffe).

2286 #2258 #2018 I believe these are the same problem. The problem seems to be inconsistency related to libstdc++.

tnarihi picture tnarihi on 14 Apr 2015

@tnarihi Thanks a lot for the pointer. The issue was with protobuf. As I had installed a fresh copy of protobuf, one which didn't have ENV flags, I had assumed it will take the default flags i.e. clang and stdc++. But I had to add those lines mentioned in installation steps and change them to libc++.
Also there was one place in cuda.cmake where a variable use_stdcpp was set. So had to comment that.
Now my make all, and make test are running fine. But getting segmentation fault in make runtest.
By running sudo make runtest... i get following output-
.build_release/tools/caffe
dyld: Library not loaded: @rpath/libcudart.7.0.dylib
Referenced from: /Users/deepsamal/Desktop/Research/caffe/.build_release/tools/caffe
Reason: image not found
make: *** [runtest] Trace/BPT trap: 5

I know it might be unrelated, and therefore am closing this thread, but please inform me if you have any ideas on my problem. Thanks.

deepsamal picture deepsamal on 15 Apr 2015

I have the same problem. Here is the error message 

Undefined symbols for architecture x86_64:
  "cv::imread(std::string const&, int)", referenced from:
      caffe::WindowDataLayer<float>::InternalThreadEntry() in window_data_layer.o
      caffe::WindowDataLayer<double>::InternalThreadEntry() in window_data_layer.o
      caffe::ReadImageToCVMat(std::string const&, int, int, bool) in io.o
  "cv::imencode(std::string const&, cv::_InputArray const&, std::vector<unsigned char, std::allocator<unsigned char> >&, std::vector<int, std::allocator<int> > const&)", referenced from:
      caffe::ReadImageToDatum(std::string const&, int, int, int, bool, std::string const&, caffe::Datum*) in io.o
  "google::protobuf::MessageLite::ParseFromString(std::string const&)", referenced from:
      caffe::DataLayer<float>::DataLayerSetUp(std::vector<caffe::Blob<float>*, std::allocator<caffe::Blob<float>*> > const&, std::vector<caffe::Blob<float>*, std::allocator<caffe::Blob<float>*> > const&) in data_layer.o
      caffe::DataLayer<float>::InternalThreadEntry() in data_layer.o
      caffe::DataLayer<double>::DataLayerSetUp(std::vector<caffe::Blob<double>*, std::allocator<caffe::Blob<double>*> > const&, std::vector<caffe::Blob<double>*, std::allocator<caffe::Blob<double>*> > const&) in data_layer.o
      caffe::DataLayer<double>::InternalThreadEntry() in data_layer.o
      caffe::Net<float>::Forward(std::string const&, float*) in net.o
      caffe::Net<double>::Forward(std::string const&, double*) in net.o
  "google::protobuf::MessageFactory::InternalRegisterGeneratedFile(char const*, void (*)(std::string const&))", referenced from:
      caffe::protobuf_AddDesc_caffe_2eproto() in caffe.pb.o
  "google::protobuf::io::CodedOutputStream::WriteStringWithSizeToArray(std::string const&, unsigned char*)", referenced from:
      caffe::Datum::SerializeWithCachedSizesToArray(unsigned char*) const in caffe.pb.o
      caffe::FillerParameter::SerializeWithCachedSizesToArray(unsigned char*) const in caffe.pb.o
      caffe::NetParameter::SerializeWithCachedSizesToArray(unsigned char*) const in caffe.pb.o
      caffe::SolverParameter::SerializeWithCachedSizesToArray(unsigned char*) const in caffe.pb.o
      caffe::SolverState::SerializeWithCachedSizesToArray(unsigned char*) const in caffe.pb.o
      caffe::NetState::SerializeWithCachedSizesToArray(unsigned char*) const in caffe.pb.o
      caffe::NetStateRule::SerializeWithCachedSizesToArray(unsigned char*) const in caffe.pb.o
      ...
  "google::protobuf::internal::WireFormatLite::ReadString(google::protobuf::io::CodedInputStream*, std::string*)", referenced from:
      caffe::FillerParameter::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*) in caffe.pb.o
      caffe::NetParameter::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*) in caffe.pb.o
      caffe::SolverParameter::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*) in caffe.pb.o
      caffe::SolverState::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*) in caffe.pb.o
      caffe::NetState::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*) in caffe.pb.o
      caffe::NetStateRule::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*) in caffe.pb.o
      caffe::ParamSpec::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*) in caffe.pb.o
      ...
  "google::protobuf::internal::WireFormatLite::WriteString(int, std::string const&, google::protobuf::io::CodedOutputStream*)", referenced from:
      caffe::NetParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::SolverParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::NetState::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::NetStateRule::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::LayerParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::V1LayerParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
  "google::protobuf::internal::WireFormatLite::WriteBytesMaybeAliased(int, std::string const&, google::protobuf::io::CodedOutputStream*)", referenced from:
      caffe::Datum::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
  "google::protobuf::internal::WireFormatLite::WriteStringMaybeAliased(int, std::string const&, google::protobuf::io::CodedOutputStream*)", referenced from:
      caffe::FillerParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::NetParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::SolverParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::SolverState::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::ParamSpec::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::LayerParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      caffe::TransformationParameter::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const in caffe.pb.o
      ...
  "google::protobuf::internal::WireFormatLite::ReadBytes(google::protobuf::io::CodedInputStream*, std::string*)", referenced from:
      caffe::Datum::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*) in caffe.pb.o
  "google::protobuf::internal::StringTypeHandlerBase::Delete(std::string*)", referenced from:
      caffe::NetParameter::NetParameter() in caffe.pb.o
      caffe::NetParameter::NetParameter(caffe::NetParameter const&) in caffe.pb.o
      caffe::NetParameter::~NetParameter() in caffe.pb.o
      caffe::SolverParameter::SolverParameter() in caffe.pb.o
      caffe::SolverParameter::SolverParameter(caffe::SolverParameter const&) in caffe.pb.o
      caffe::SolverParameter::~SolverParameter() in caffe.pb.o
      caffe::NetState::NetState() in caffe.pb.o
      ...
  "leveldb::DB::Open(leveldb::Options const&, std::string const&, leveldb::DB**)", referenced from:
      caffe::db::LevelDB::Open(std::string const&, caffe::db::Mode) in db.o
  "google::protobuf::MessageLite::SerializeToString(std::string*) const", referenced from:
      caffe::Net<float>::Forward(std::string const&, float*) in net.o
      caffe::Net<double>::Forward(std::string const&, double*) in net.o
  "google::protobuf::DescriptorPool::FindFileByName(std::string const&) const", referenced from:
      caffe::protobuf_AssignDesc_caffe_2eproto() in caffe.pb.o
  "google::protobuf::Message::SerializeToOstream(std::ostream*) const", referenced from:
      caffe::WriteProtoToBinaryFile(google::protobuf::Message const&, char const*) in io.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [.build_release/lib/libcaffe.so] Error 1
make: *** Waiting for unfinished jobs....

I checked my libprotobuf @tnarihi 

/usr/local/lib/libprotobuf.9.dylib:
    /usr/local/lib/libprotobuf.9.dylib (compatibility version 10.0.0, current version 10.1.0)
    /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.5)
    /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 120.0.0)
    /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1213.0.0)

It seems already linked to libc++, not libstdc++.
Any suggestions?

zarzen picture zarzen on 6 May 2015

Seems I found the problem. Because my cuda7 was upgrade from cuda6.5 through system panel.
nvcc -V still tell me 6.5

zarzen picture zarzen on 6 May 2015

I have the same problem, I tried every method but it is no work; my error log as bellow:
MacOS 10.12.6, Opencv 2.7.14.0, Cuda and Anaconda is the latest version, I do not known how to
get the Cuda and Anaconda version

➜  caffe git:(master) make all -j4
PROTOC src/caffe/proto/caffe.proto
CXX src/caffe/blob.cpp
CXX src/caffe/common.cpp
CXX src/caffe/data_transformer.cpp
CXX src/caffe/internal_thread.cpp
CXX src/caffe/layer.cpp
CXX src/caffe/layer_factory.cpp
CXX src/caffe/layers/absval_layer.cpp
CXX src/caffe/layers/accuracy_layer.cpp
CXX src/caffe/layers/argmax_layer.cpp
CXX src/caffe/layers/base_conv_layer.cpp
CXX src/caffe/layers/base_data_layer.cpp
CXX src/caffe/layers/batch_norm_layer.cpp
CXX src/caffe/layers/batch_reindex_layer.cpp
CXX src/caffe/layers/bias_layer.cpp
CXX src/caffe/layers/bnll_layer.cpp
CXX src/caffe/layers/concat_layer.cpp
CXX src/caffe/layers/contrastive_loss_layer.cpp
CXX src/caffe/layers/conv_layer.cpp
CXX src/caffe/layers/crop_layer.cpp
CXX src/caffe/layers/cudnn_conv_layer.cpp
CXX src/caffe/layers/cudnn_lcn_layer.cpp
CXX src/caffe/layers/cudnn_lrn_layer.cpp
CXX src/caffe/layers/cudnn_pooling_layer.cpp
CXX src/caffe/layers/cudnn_relu_layer.cpp
CXX src/caffe/layers/cudnn_sigmoid_layer.cpp
CXX src/caffe/layers/cudnn_softmax_layer.cpp
CXX src/caffe/layers/cudnn_tanh_layer.cpp
CXX src/caffe/layers/data_layer.cpp
CXX src/caffe/layers/deconv_layer.cpp
CXX src/caffe/layers/dropout_layer.cpp
In file included from src/caffe/layers/crop_layer.cpp:10:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/layers/dummy_data_layer.cpp
CXX src/caffe/layers/eltwise_layer.cpp
CXX src/caffe/layers/elu_layer.cpp
CXX src/caffe/layers/embed_layer.cpp
CXX src/caffe/layers/euclidean_loss_layer.cpp
CXX src/caffe/layers/exp_layer.cpp
CXX src/caffe/layers/filter_layer.cpp
CXX src/caffe/layers/flatten_layer.cpp
CXX src/caffe/layers/hdf5_data_layer.cpp
CXX src/caffe/layers/hdf5_output_layer.cpp
CXX src/caffe/layers/hinge_loss_layer.cpp
CXX src/caffe/layers/im2col_layer.cpp
CXX src/caffe/layers/image_data_layer.cpp
CXX src/caffe/layers/infogain_loss_layer.cpp
CXX src/caffe/layers/inner_product_layer.cpp
CXX src/caffe/layers/input_layer.cpp
CXX src/caffe/layers/log_layer.cpp
CXX src/caffe/layers/loss_layer.cpp
CXX src/caffe/layers/lrn_layer.cpp
CXX src/caffe/layers/lstm_layer.cpp
CXX src/caffe/layers/lstm_unit_layer.cpp
CXX src/caffe/layers/memory_data_layer.cpp
CXX src/caffe/layers/multinomial_logistic_loss_layer.cpp
In file included from src/caffe/layers/lstm_layer.cpp:8:
In file included from ./include/caffe/layers/lstm_layer.hpp:11:
In file included from ./include/caffe/layers/recurrent_layer.hpp:11:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/layers/mvn_layer.cpp
In file included from src/caffe/layers/lstm_unit_layer.cpp:6:
In file included from ./include/caffe/layers/lstm_layer.hpp:11:
In file included from ./include/caffe/layers/recurrent_layer.hpp:11:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/layers/neuron_layer.cpp
CXX src/caffe/layers/parameter_layer.cpp
CXX src/caffe/layers/pooling_layer.cpp
CXX src/caffe/layers/power_layer.cpp
CXX src/caffe/layers/prelu_layer.cpp
CXX src/caffe/layers/recurrent_layer.cpp
CXX src/caffe/layers/reduction_layer.cpp
CXX src/caffe/layers/relu_layer.cpp
CXX src/caffe/layers/reshape_layer.cpp
In file included from src/caffe/layers/recurrent_layer.cpp:8:
In file included from ./include/caffe/layers/recurrent_layer.hpp:11:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/layers/rnn_layer.cpp
CXX src/caffe/layers/scale_layer.cpp
CXX src/caffe/layers/sigmoid_cross_entropy_loss_layer.cpp
CXX src/caffe/layers/sigmoid_layer.cpp
In file included from src/caffe/layers/rnn_layer.cpp:8:
In file included from ./include/caffe/layers/rnn_layer.hpp:11:
In file included from ./include/caffe/layers/recurrent_layer.hpp:11:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/layers/silence_layer.cpp
CXX src/caffe/layers/slice_layer.cpp
CXX src/caffe/layers/softmax_layer.cpp
CXX src/caffe/layers/softmax_loss_layer.cpp
CXX src/caffe/layers/split_layer.cpp
CXX src/caffe/layers/spp_layer.cpp
CXX src/caffe/layers/tanh_layer.cpp
CXX src/caffe/layers/threshold_layer.cpp
CXX src/caffe/layers/tile_layer.cpp
CXX src/caffe/layers/window_data_layer.cpp
CXX src/caffe/net.cpp
CXX src/caffe/parallel.cpp
CXX src/caffe/solver.cpp
CXX src/caffe/solvers/adadelta_solver.cpp
In file included from src/caffe/solvers/adadelta_solver.cpp:3:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/solvers/adagrad_solver.cpp
CXX src/caffe/solvers/adam_solver.cpp
In file included from src/caffe/solver.cpp:6:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/solvers/nesterov_solver.cpp
In file included from src/caffe/net.cpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
src/caffe/net.cpp:557:3: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
  LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: Forward(bottom, loss) "
  ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
2 warnings generated.
CXX src/caffe/solvers/rmsprop_solver.cpp
In file included from src/caffe/solvers/adagrad_solver.cpp:3:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/solvers/sgd_solver.cpp
In file included from src/caffe/solvers/adam_solver.cpp:3:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/syncedmem.cpp
In file included from src/caffe/solvers/nesterov_solver.cpp:3:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/util/benchmark.cpp
CXX src/caffe/util/blocking_queue.cpp
In file included from src/caffe/solvers/rmsprop_solver.cpp:3:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/util/cudnn.cpp
CXX src/caffe/util/db.cpp
CXX src/caffe/util/db_leveldb.cpp
CXX src/caffe/util/db_lmdb.cpp
In file included from src/caffe/solvers/sgd_solver.cpp:4:
In file included from ./include/caffe/sgd_solvers.hpp:7:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/util/hdf5.cpp
CXX src/caffe/util/im2col.cpp
CXX src/caffe/util/insert_splits.cpp
src/caffe/util/blocking_queue.cpp:49:7: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
      LOG_EVERY_N(INFO, 1000)<< log_on_wait;
      ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX src/caffe/util/io.cpp
CXX src/caffe/util/math_functions.cpp
CXX src/caffe/util/signal_handler.cpp
CXX src/caffe/util/upgrade_proto.cpp
CXX tools/caffe.cpp
CXX tools/compute_image_mean.cpp
In file included from src/caffe/util/signal_handler.cpp:7:
In file included from ./include/caffe/util/signal_handler.h:5:
In file included from ./include/caffe/solver.hpp:7:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/convert_imageset.cpp
CXX tools/device_query.cpp
CXX tools/extract_features.cpp
CXX tools/finetune_net.cpp
CXX tools/net_speed_benchmark.cpp
In file included from tools/caffe.cpp:15:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/test_net.cpp
In file included from tools/finetune_net.cpp:1:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/train_net.cpp
In file included from tools/extract_features.cpp:9:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/upgrade_net_proto_binary.cpp
In file included from tools/net_speed_benchmark.cpp:1:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/upgrade_net_proto_text.cpp
In file included from tools/test_net.cpp:1:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX tools/upgrade_solver_proto_text.cpp
In file included from tools/train_net.cpp:1:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX examples/cifar10/convert_cifar_data.cpp
In file included from tools/upgrade_net_proto_binary.cpp:10:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX examples/cpp_classification/classification.cpp
In file included from tools/upgrade_net_proto_text.cpp:10:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX examples/mnist/convert_mnist_data.cpp
CXX examples/siamese/convert_mnist_siamese_data.cpp
In file included from tools/upgrade_solver_proto_text.cpp:10:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
CXX .build_release/src/caffe/proto/caffe.pb.cc
In file included from examples/cpp_classification/classification.cpp:1:
In file included from ./include/caffe/caffe.hpp:12:
./include/caffe/net.hpp:41:5: warning: unused typedef 'INVALID_REQUESTED_LOG_SEVERITY' [-Wunused-local-typedef]
    LOG_EVERY_N(WARNING, 1000) << "DEPRECATED: ForwardPrefilled() "
    ^
/Users/chenxingyi/anaconda2/include/glog/logging.h:943:30: note: expanded from macro 'LOG_EVERY_N'
                             INVALID_REQUESTED_LOG_SEVERITY);           \
                             ^
1 warning generated.
AR -o .build_release/lib/libcaffe.a
LD -o .build_release/lib/libcaffe.so.1.0.0
clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument]
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_conv_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_lcn_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_lrn_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_pooling_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_relu_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_sigmoid_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_softmax_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn_tanh_layer.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(parallel.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .build_release/lib/libcaffe.a(cudnn.o) has no symbols
Undefined symbols for architecture x86_64:
  "cv::imread(cv::String const&, int)", referenced from:
      caffe::WindowDataLayer<float>::load_batch(caffe::Batch<float>*) in window_data_layer.o
      caffe::WindowDataLayer<double>::load_batch(caffe::Batch<double>*) in window_data_layer.o
      caffe::ReadImageToCVMat(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int, int, bool) in io.o
  "cv::imdecode(cv::_InputArray const&, int)", referenced from:
      caffe::DecodeDatumToCVMatNative(caffe::Datum const&) in io.o
      caffe::DecodeDatumToCVMat(caffe::Datum const&, bool) in io.o
  "cv::imencode(cv::String const&, cv::_InputArray const&, std::__1::vector<unsigned char, std::__1::allocator<unsigned char> >&, std::__1::vector<int, std::__1::allocator<int> > const&)", referenced from:
      caffe::ReadImageToDatum(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int, int, int, bool, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, caffe::Datum*) in io.o
  "leveldb::DB::Open(leveldb::Options const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, leveldb::DB**)", referenced from:
      caffe::db::LevelDB::Open(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, caffe::db::Mode) in db_leveldb.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [.build_release/lib/libcaffe.so.1.0.0] Error 1
make: *** Waiting for unfinished jobs....

Any one can help me ?

cxy200927099 picture cxy200927099 on 29 Nov 2017
👍2

@cxy200927099 I am having exactly the same issue. 10.11.5, Homebrew dependencies including opencv-3.4.0_1.el_capitan.bottle.tar.gz

A hint to the solution is given here: https://stackoverflow.com/a/27904334/173515

Add OPENCV_VERSION to your Makefile.config, e.g.:

...
# uncomment to disable IO dependencies and corresponding data layers
# USE_OPENCV := 0
OPENCV_VERSION := 3
...

That fixed the link problem vs opencv for me.

toby5box picture toby5box on 15 Jan 2018
👍1

@toby5box thanks for reply, I use the docker on my macOS, And it works

cxy200927099 picture cxy200927099 on 13 Feb 2018
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