Caffe: SSD caffe Compile error

Created on 10 Nov 2017 · 8Comments · Source: BVLC/caffe

Issue summary

.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::cpp_regex_traits_implementation<char>::transform_primary(char const*, char const*) const' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::cpp_regex_traits_implementation::transform(char const, char const) const'
.build_release/lib/libcaffe.so: undefined reference to boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > > const&)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::put_mem_block(void)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::get_mem_block()' .build_release/lib/libcaffe.so: undefined reference toboost::basic_regex > >::do_assign(char const, char const, unsigned int)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::raise_runtime_error(std::runtime_error const&)' .build_release/lib/libcaffe.so: undefined reference toboost::cpp_regex_traits::toi(char const&, char const, int) const'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::verify_options(unsigned int, boost::regex_constants::_match_flags)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::get_default_error_string(boost::regex_constants::error_type)' collect2: error: ld returned 1 exit status Makefile:627: recipe for target '.build_release/tools/upgrade_net_proto_binary.bin' failed make: *** [.build_release/tools/upgrade_net_proto_binary.bin] Error 1 make: *** Waiting for unfinished jobs.... .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::cpp_regex_traits_implementation::transform_primary(char const, char const) const'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::cpp_regex_traits_implementation<char>::transform(char const*, char const*) const' .build_release/lib/libcaffe.so: undefined reference toboost::match_results<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > > > const&)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::put_mem_block(void*)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::get_mem_block()'
.build_release/lib/libcaffe.so: undefined reference to boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::do_assign(char const*, char const*, unsigned int)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::raise_runtime_error(std::runtime_error const&)'
.build_release/lib/libcaffe.so: undefined reference to boost::cpp_regex_traits<char>::toi(char const*&, char const*, int) const' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::perl_matcher<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > >, boost::regex_traits > >::construct_init(boost::basic_regex > > const&, boost::regex_constants::_match_flags)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::verify_options(unsigned int, boost::regex_constants::_match_flags)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::get_default_error_string(boost::regex_constants::error_type)'
collect2: error: ld returned 1 exit status
Makefile:627: recipe for target '.build_release/tools/caffe.bin' failed
make: [.build_release/tools/caffe.bin] Error 1
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::cpp_regex_traits_implementation<char>::transform_primary(char const*, char const*) const' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::cpp_regex_traits_implementation::transform(char const, char const) const'
.build_release/lib/libcaffe.so: undefined reference to boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > > const&)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::put_mem_block(void)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::get_mem_block()' .build_release/lib/libcaffe.so: undefined reference toboost::basic_regex > >::do_assign(char const, char const, unsigned int)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::raise_runtime_error(std::runtime_error const&)' .build_release/lib/libcaffe.so: undefined reference toboost::cpp_regex_traits::toi(char const&, char const, int) const'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::verify_options(unsigned int, boost::regex_constants::_match_flags)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::get_default_error_string(boost::regex_constants::error_type)' collect2: error: ld returned 1 exit status Makefile:627: recipe for target '.build_release/tools/convert_annoset.bin' failed make: *** [.build_release/tools/convert_annoset.bin] Error 1 .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::cpp_regex_traits_implementation::transform_primary(char const, char const) const'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::cpp_regex_traits_implementation<char>::transform(char const*, char const*) const' .build_release/lib/libcaffe.so: undefined reference toboost::match_results<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > > > const&)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::put_mem_block(void*)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::get_mem_block()'
.build_release/lib/libcaffe.so: undefined reference to boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::do_assign(char const*, char const*, unsigned int)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::raise_runtime_error(std::runtime_error const&)'
.build_release/lib/libcaffe.so: undefined reference to boost::cpp_regex_traits<char>::toi(char const*&, char const*, int) const' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::perl_matcher<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > >, boost::regex_traits > >::construct_init(boost::basic_regex > > const&, boost::regex_constants::_match_flags)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::verify_options(unsigned int, boost::regex_constants::_match_flags)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::get_default_error_string(boost::regex_constants::error_type)'
collect2: error: ld returned 1 exit status
Makefile:627: recipe for target '.build_release/tools/extract_features.bin' failed
make: * [.build_release/tools/extract_features.bin] Error 1
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::cpp_regex_traits_implementation<char>::transform_primary(char const*, char const*) const' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::cpp_regex_traits_implementation::transform(char const, char const) const'
.build_release/lib/libcaffe.so: undefined reference to boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > > const&)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::put_mem_block(void)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::get_mem_block()' .build_release/lib/libcaffe.so: undefined reference toboost::basic_regex > >::do_assign(char const, char const, unsigned int)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::raise_runtime_error(std::runtime_error const&)' .build_release/lib/libcaffe.so: undefined reference toboost::cpp_regex_traits::toi(char const&, char const, int) const'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::verify_options(unsigned int, boost::regex_constants::_match_flags)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::get_default_error_string(boost::regex_constants::error_type)' collect2: error: ld returned 1 exit status Makefile:627: recipe for target '.build_release/tools/upgrade_solver_proto_text.bin' failed make: *** [.build_release/tools/upgrade_solver_proto_text.bin] Error 1 .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::cpp_regex_traits_implementation::transform_primary(char const, char const) const'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::cpp_regex_traits_implementation<char>::transform(char const*, char const*) const' .build_release/lib/libcaffe.so: undefined reference toboost::match_results<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > > > const&)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::put_mem_block(void*)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::get_mem_block()'
.build_release/lib/libcaffe.so: undefined reference to boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::do_assign(char const*, char const*, unsigned int)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::raise_runtime_error(std::runtime_error const&)'
.build_release/lib/libcaffe.so: undefined reference to boost::cpp_regex_traits<char>::toi(char const*&, char const*, int) const' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::perl_matcher<__gnu_cxx::__normal_iterator, std::allocator > >, std::allocator, std::allocator > > > >, boost::regex_traits > >::construct_init(boost::basic_regex > > const&, boost::regex_constants::_match_flags)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::verify_options(unsigned int, boost::regex_constants::_match_flags)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::get_default_error_string(boost::regex_constants::error_type)'
collect2: error: ld returned 1 exit status
Makefile:627: recipe for target '.build_release/tools/compute_image_mean.bin' failed
make: * [.build_release/tools/compute_image_mean.bin] Error 1
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::cpp_regex_traits_implementation<char>::transform_primary(char const*, char const*) const' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::cpp_regex_traits_implementation::transform(char const, char const) const'
.build_release/lib/libcaffe.so: undefined reference to boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > > const&)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::put_mem_block(void)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::get_mem_block()' .build_release/lib/libcaffe.so: undefined reference toboost::basic_regex > >::do_assign(char const, char const, unsigned int)'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::raise_runtime_error(std::runtime_error const&)' .build_release/lib/libcaffe.so: undefined reference toboost::cpp_regex_traits::toi(char const&, char const*, int) const'
.build_release/lib/libcaffe.so: undefined reference to boost::re_detail::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags)' .build_release/lib/libcaffe.so: undefined reference toboost::re_detail::verify_options(unsigned int, boost::regex_constants::_match_flags)'
.build_release/lib/libcaffe.so: undefined reference to `boost::re_detail::get_default_error_string(boost::regex_constants::error_type)'
collect2: error: ld returned 1 exit status
Makefile:627: recipe for target '.build_release/tools/create_label_map.bin' failed
make: * [.build_release/tools/create_label_map.bin] Error 1

Steps to reproduce

If you are having difficulty building Caffe or training a model, please ask the caffe-users mailing list. If you are reporting a build error that seems to be due to a bug in Caffe, please attach your build configuration (either Makefile.config or CMakeCache.txt) and the output of the make (or cmake) command.

Your system configuration

Operating system: Ubuntu 16.04
Compiler:
CUDA version (if applicable):cuda8.0
CUDNN version (if applicable):cudnn5.1
BLAS:
Python or MATLAB version (for pycaffe and matcaffe respectively):ptython2.7

Source

YYaiLearner

Most helpful comment

This is likely due to the problem that when the system use gcc-5.x.x, it requires -std=c++11, but the boost lib in Debian system are built without such an option. So you need to build your own version of boost. My solution is:

1) Find the version of the current boost lib. In my scenario, I install boost in miniconda2, the version is boost-1.67.0.
2) Download the boost lib source file with exactly the same version from https://www.boost.org/.
3) Compile boost with std=c++11 using: $b2 toolset=gcc cxxflags=”-std=c++11”
4) Copy the generated library to replace the original boost library: $cp boost-1.67.0/stage/lib/* ~/miniconda2/lib/
5) Compile caffe and done.

uuudown on 20 Sep 2018

👍7

All 8 comments

I have a caffe environment has compiled completely and can work. who can help me solve this problem .THANK YOU VERY MUCH

YYaiLearner on 10 Nov 2017

Maybe your boost version is too low, a 1.6x is needed to successfully build it. @YYaiLearner

stoneyang on 10 Nov 2017

Closing as not directly related to original Caffe. Consider posting this issue in its own fork.

Noiredd on 10 Nov 2017

Did you solve it? I met the same problem and don't know what to do.

andeyeluguo on 24 Nov 2017

try this
fixed your Makefile
https://github.com/rbgirshick/fast-rcnn/issues/52

xwater8 on 24 Nov 2017

yes ，i just sovle this the problem by your problem, and it worked.@xwater8

andeyeluguo on 24 Nov 2017

uuudown on 20 Sep 2018

👍7

This is likely due to the problem that when the system use gcc-5.x.x, it requires -std=c++11, but the boost lib in Debian system are built without such an option. So you need to build your own version of boost. My solution is:

Find the version of the current boost lib. In my scenario, I install boost in miniconda2, the version is boost-1.67.0.

Download the boost lib source file with exactly the same version from https://www.boost.org/.

Compile boost with std=c++11 using: $b2 toolset=gcc cxxflags=”-std=c++11”

Copy the generated library to replace the original boost library: $cp boost-1.67.0/stage/lib/* ~/miniconda2/lib/

Compile caffe and done.

It works! Thanks!!